Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nosema_20ceranae_20[genbank_20GCA_5F000988165.1_202015-05-05] 536 sequences; 5,690,748 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq478 125 6e-24 seq35 113 4e-20 >seq478 Length=25159 Score = 125 bits (138), Expect = 6e-24 Identities = 171/239 (72%), Gaps = 5/239 (2%) Strand=Plus/Minus Query 26966 TAAATTTTTTAATTTATACGCC-----ATGCAGATATTTGTAAAAACTCTGACCGGCAAG 27020 |||||||||| | | ||| || ||||| |||||||||||||| || || || || Sbjct 21880 TAAATTTTTTTTTCTTTACCCCCCAAAATGCAAATATTTGTAAAAACGCTAACAGGAAAA 21821 Query 27021 TCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAA 27080 |||||||| | || || || | ||||| ||||| | || ||| ||||||||| Sbjct 21820 ACTATTACTTTAGACGTAGAGTCTAATGACTCCATTGAAAATGTAAAAGCTAAAATTCAA 21761 Query 27081 GACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAA 27140 ||||||||||| |||||||| ||||||||| | || || | || || ||||| | ||| Sbjct 21760 GACAAAGAAGGAATACCACCAGATCAACAGAGATTGATTTTTGCTGGTAAACAGCTTGAA 21701 Query 27141 GACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTT 27199 || || ||| || |||||||| || || || || || |||||| | ||||| Sbjct 21700 GATGGTAGGACACTTAGTGATTACAATATACAGAAAGAAAGTACTTTACATCTAGTTTT 21642 >seq35 Length=73508 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| ||||||||||| || || || || || | |||||| | || || |||||| Sbjct 17036 ATGCAAATATTTGTAAAGACACTCACAGGAAAAACAATTACTTTAGATGTTGAACCGGGG 17095 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || || || || | || || ||||| ||||| |||||||| |||||||| |||||| Sbjct 17096 GATTCTATAGAAAATGTAAAGGCTAAAATACAAGATAAAGAAGGTATACCACCAGATCAA 17155 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | |||| || || || ||||||||||| | || || || || ||| Sbjct 17156 CAGAGACTTATATTTGCAGGTAAGCAATTGGAAGATGGAAGAACACTTAATGACTATAAC 17215 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 |||||||| || || || |||||||| ||| | || | ||||| Sbjct 17216 ATTCAAAAAGAAAGTACTTTGCATTTGGTGTTGAGATTAAGAGGTGG 17262 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434915486046720