Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nosema_20ceranae_20[genbank_20GCA_5F000988165.1_202015-05-05] 536 sequences; 5,690,748 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq478 141 6e-29 seq35 104 2e-17 >seq478 Length=25159 Score = 141 bits (156), Expect = 6e-29 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 |||||||| || || || ||||| || || |||||||| || ||| | || || || || Sbjct 21856 AAAATGCAAATATTTGTAAAAACGCTAACAGGAAAAACTATTACTTTAGACGTAGAGTCT 21797 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | ||| | |||||| ||||| |||||| ||||||||||| |||| |||||| Sbjct 21796 AATGACTCCATTGAAAATGTAAAAGCTAAAATTCAAGACAAAGAAGGAATACCACCAGAT 21737 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 |||||| | || || ||||| || ||||| || ||||| | | || | | |||||| Sbjct 21736 CAACAGAGATTGATTTTTGCTGGTAAACAGCTTGAAGATGGTAGGACACTTAGTGATTAC 21677 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 || ||||| ||||| || |||||| |||||||||| || |||||||| Sbjct 21676 AATATACAGAAAGAAAGTACTTTACATCTAGTTTTAAGATTAAGAGGAGGA 21626 >seq35 Length=73508 Score = 104 bits (114), Expect = 2e-17 Identities = 162/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| || || || || || ||||| |||||||| || ||| | || ||||| | Sbjct 17035 AATGCAAATATTTGTAAAGACACTCACAGGAAAAACAATTACTTTAGATGTTGAACCGGG 17094 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||| || | |||| |||| ||||| || ||||||||| |||| |||||||| Sbjct 17095 GGATTCTATAGAAAATGTAAAGGCTAAAATACAAGATAAAGAAGGTATACCACCAGATCA 17154 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACG--CACTTTAGGCGATTAC 23787 |||| | | |||||||| || || ||| ||||||| | | | ||||| | || || Sbjct 17155 ACAGAGACTTATATTTGCAGGTAAGCAATTGGAAGATGGAAGAACACTTAA--TGACTAT 17212 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||||| |||||||| || || ||||| || || || || |||| || Sbjct 17213 AACATTCAAAAAGAAAGTACTTTGCATTTGGTGTTGAGATTAAGAGGTGG 17262 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338007391952288