Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nosema_20ceranae_20[genbank_20GCA_5F000988165.1_202015-05-05] 536 sequences; 5,690,748 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq2 324 1e-83 >seq2 Length=91783 Score = 324 bits (358), Expect = 1e-83 Identities = 598/875 (68%), Gaps = 18/875 (2%) Strand=Plus/Minus Query 4256 TTTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATT 4315 |||||| |||| || ||| || || |||||||| ||||| ||| |||| ||||| Sbjct 37512 TTTTTGATATTGTGACTCTCTTTTATCAAAGAAATTGGTTTTCCCTACTAAACTTATATT 37453 Query 4316 TTCCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAG 4375 |||||||||||| || ||||| || ||||||| ||| ||| || | | | Sbjct 37452 TTCCATAAAATCGAAGGGATTCAGTGTATTGTAATATTTCTCAAGTCCTAAATTAATTAA 37393 Query 4376 CAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAA 4435 |||| |||||||||||||| ||||| || | ||| || | || || || ||||| | Sbjct 37392 TAATCTATCAGCTACAAATTCAATATATTGACACATAAGCTTACAATTCATCCCAATAAG 37333 Query 4436 TCTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTAT 4495 | || |||| | | | ||| |||| ||||| ||| |||||| | | ||| Sbjct 37332 ATTTACCGGTAAACTGACACTTAGAAATTCTTTCTCTATTTCTACCGCTTCTTTCACTAT 37273 Query 4496 ATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAA 4555 ||| || | | | |||||| | ||| ||| | | ||||| || || Sbjct 37272 ATCAAGAATGTGT------GGCGATTTATTAATTAAATATTGATTTAGCAAACAAGCGAA 37219 Query 4556 ATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCAT 4615 ||||||||||| ||||| || || ||| | ||| ||||| || || | || ||||| Sbjct 37218 GTCACAATGCAACCCTTCATCCCTAGAAATTAATTCATTAGAGAAAGTAAGACCAGGCAT 37159 Query 4616 TAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTC 4675 | |||||| || || ||||| || || | ||||||| || ||||| ||||| ||||| Sbjct 37158 AAGACCTCTGTTCTTTAGCCAGAAGATTGACGCAAATGCGCCGGAAAAAAATATTCCTTC 37099 Query 4676 TACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTG--TCTTTAATCCAT 4733 |||| ||||| || | | || | | |||| || || ||| |||||||||||| Sbjct 37098 TACGCACGCAAAAGCAATGACGCGTGTCGCGAATGA--TGATTTTTCATCTTTAATCCAT 37041 Query 4734 TTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATAAT 4793 || | |||||||| |||||| || || | || ||||| || ||| || ||||| | Sbjct 37040 TTAAGTGCCCAGTCAGCTTTCTTTTTTATACATGGAATAGTACTTATCGCATTAAAGAGA 36981 Query 4794 TTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAA 4853 | |||||||| | | ||| |||||||| ||||||| || |||||| ||| | Sbjct 36980 TGTGTTTTTTCATCTTGATCTGTAATATAAGCATCTATTAATAATGAATACATCTCACTA 36921 Query 4854 TGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACT 4913 || ||||||||||| || | |||||||| |||||||| | |||||| || | ||| Sbjct 36920 TGAATATTTTCTATGGCTACTTGAAATCCATAAAAGCACTTTGCTTCTAATATTGTCACT 36861 Query 4914 TCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAAC 4973 || ||| ||||| || ||||| || |||| || ||||| || || |||||||| Sbjct 36860 TCATTAGCGAATCTCTCAACTAAATTGGCGTTAACAATACCATCTGACGCGGCAAAAAAT 36801 Query 4974 GCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAA 5033 || |||| || || |||||||| ||| | | || | | | ||| | || Sbjct 36800 GCTAAAATATTTGAAATAAAGTATCTTTCTTTATCATTTAATGATAACCAAT----CATT 36745 Query 5034 TCTTT----AGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTA 5089 ||| | ||||| |||||||||||| || ||||| || || | || |||||||| || Sbjct 36744 TCTGTCGGCAGTTAGATCAACTTCTTCTACCGTCCAGAATGATGACTCGGCTTTTTTATA 36685 Query 5090 CATAGACCAAATATCAGGATACTGAATCGGAAGTA 5124 ||| ||| || ||| |||| | ||| |||| || Sbjct 36684 CATCTGCCATATGTCATGATATTTAATAGGAAATA 36650 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427046810298488