Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nosema_20ceranae_20[genbank_20GCA_5F000988165.1_202015-05-05] 536 sequences; 5,690,748 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq504 300 2e-76 seq2 286 5e-72 seq466 214 2e-50 >seq504 Length=119805 Score = 300 bits (332), Expect = 2e-76 Identities = 907/1381 (66%), Gaps = 30/1381 (2%) Strand=Plus/Plus Query 76811 TGTACGTAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCT 76870 ||| | || ||| ||||| |||||||||| || | || | || |||||||| || Sbjct 9220 TGTCCTTAAATAATACATGCCAGTTTTTAATCCGCTCTTAAATGCATAAAAATGCATACT 9279 Query 76871 TGTCAGTTTGGAATAACTAGGATCGGCTATATGAATA--TTCATCGACTGACTTTGATCG 76928 | ||||| |||||| | || | || | ||||| || | |||||| ||||||| Sbjct 9280 GCTTAGTTTAGAATAAGTGGGCTGTGCCAC--GAATAAATTTAATGACTGAGATTGATCG 9337 Query 76929 ATGAAA-GCTCCTCTATCAGCCGCCATTTTTATAA--TGGTC--TTTTGAGGAATTTCCC 76983 || ||| ||| | |||||| || | | ||| | || | |||| || ||||| Sbjct 9338 ATAAAAAGCTGA-CGATCAGCAGCTAAATCTATCACATGCTTCATTTTTAG----TTCCC 9392 Query 76984 AAATAGTTTTGAAAACTTGTTTGATATCATCTGGAA--GGTTTG-TATTTTGAATGGAAC 77040 | |||||| ||| | ||| ||||| | ||| | | ||| ||||||| || || | Sbjct 9393 ATGCAGTTTTATAAAGATCTTTAATATCCTGTGGTATAGATTTAATATTTTGTATTGATC 9452 Query 77041 CACCATCTGATATAATTGTATTCTTTATATCATCATTCCACAATTTCCTCTCTGTTAAAA 77100 | ||| | ||||| || || || |||| | ||| || || | ||||| Sbjct 9453 CTTCATATTCAATAATCAGGTTTTTCATTTCATGAGACCATAAATTTAAATTAATTAAAT 9512 Query 77101 CTCTAAGGAGATGAGGATTAACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAA 77160 || | | | | |||| || |||||||| ||||| | | ||| | ||| |||| Sbjct 9513 CTTTCAACAAGTATTGATTGACAATTTGAAACTCTCCTGCATGTGTTCTTCTAGTATAAA 9572 Query 77161 TATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAG 77220 |||| || |||| || | ||||||| || |||||||||| |||| ||||| Sbjct 9573 TATTTGAAGTGAATGGCTCAAAGCATTCATTATTATTAAAAATTTGAGAAGTACTAGCAG 9632 Query 77221 TTGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTA 77280 | |||||||| | || | | ||||||||| | ||||| || | || || ||| | | Sbjct 9633 TAGGCATAGGAGATACTAGAAGACTATTTCTCACCCCATGCTTTTTTATCTTTTCTCTAA 9692 Query 77281 GATATTTCCAATCCCAAAGATCTGAAGGTACAACATCCCAAAGATCGTATTGTAGAATTC 77340 | | ||||| | | || || | | | || | || | || | ||||| Sbjct 9693 GTAAATTCCATTTTTCTAAATTTGGAACTTTTTTTTTGCATAACTCAAAGTGAAAAATTC 9752 Query 77341 CGTTACT-AGCATATGATCCATTATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCA 77399 | ||||| | | | || || ||||||||||||| || | | || || |||||| Sbjct 9753 CTTTACTTAACGGA-GAGCCTGCGAATGTTTCATAAGGACCATATTCTTTTGCAAGTTCA 9811 Query 77400 CAACT--CGCTTCCAATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTT 77457 ||| | |||| | || |||||||||||||| || || || ||| | |||| Sbjct 9812 --ACTGACTCTTCAAGAGCGGAATAATAAATTGTTTCAAATATTTTAAAATTTAAATCTC 9869 Query 77458 GTGCTTCAATACTATCAAACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAA 77517 || | ||| ||||| ||||| | | || | ||| |||||||| ||||| || | Sbjct 9870 TAGCATTTTGACTGTCAAAAGGATATCGCATTAGTACAAAAGCATCTGCCAATCCTTGTA 9929 Query 77518 CTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAAT 77577 | || || |||||||||| ||||| || ||||| |||| | ||||||| Sbjct 9930 CACCTATTCCAATAGGTCGGTGTCTAAAGTTACTCCTTTTACATTCTTCTACAGGATAAA 9989 Query 77578 AATTAATGTCTATAATTTTATTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTT 77637 | || |||| ||| ||||| |||||||| | ||||| || | | || | Sbjct 9990 ATGTACTGTCAATACAATTATTTAGATTTCTTGTTATAACTTTTACAATTTTTGACAGCT 10049 Query 77638 TAAGAAAATCAAATCTTCCATCTATAACAAACATGTTCAAAGCTATAGA--TGCTAGATT 77695 |||||||||| |||| ||| | ||||| | || |||| | | | ||| || || Sbjct 10050 CTTCAAAATCAAATTTTCCTTCTCTTACAAA-ACGTG-AAAGACAAACACTTGCCAGGTT 10107 Query 77696 ACAAACTGCTACCTCATTAGCGTTGGCATATTGTATTATCTCGGTACATAGATTACTACA 77755 |||||| || | ||||| | || ||||| ||||| || | |||| ||| | Sbjct 10108 ACAAACAGCAATTTCATTTTTATCGGAATATTCAATTATTTCTGCGCATAAATTTGATGA 10167 Query 77756 TTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAAT 77815 ||| || |||||| ||||||||| || || | ||||||||| || |||||||| || Sbjct 10168 TTTTATTATGCCCAAATTTTGTTGATTACTTAATCTATTGCATGTATCTTTATAAAGCAT 10227 Query 77816 AAACGGAGTCCCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTT 77875 | || || || ||||| || |||| ||| || || | ||||| | ||||||||| Sbjct 10228 GTATGGTGTACCTGTTTCTATTTGTGCTTCAATTATTGCCTTCCACAATTTTCTAGCTTT 10287 Query 77876 TATCATAGATTTGTATCGCCTCTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATC 77935 | | | || ||| | | || |||||||| || |||| | ||| || || Sbjct 10288 AACAACCG--TTCTATTTTTTGT-TCGTTCATATTTTGTGTATAATTTATTAAAATCCTC 10344 Query 77936 TCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATC 77995 |||||||||||||| | || || |||||||| | |||||||| || ||| Sbjct 10345 GCCCCAAACATCATCGAGACCTTTAGCCTCGTTTGGGCAAAATAATGACCATTCTTCATT 10404 Query 77996 TTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGT 78055 || | ||||| || |||||| | |||| |||||| | ||| |||| | ||||| | Sbjct 10405 TTTGTCAACTCTTTCCATAAATAAATCATTTATCCACAATGCAGTAAAAATATCTCTAGC 10464 Query 78056 TCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATG 78115 |||| |||||| |||| ||||| ||| | | ||| | ||| || | |||||| ||| Sbjct 10465 TCTAATATCTTCACTTCCGGTATTTTTTCTTAAATCTAAAAAATCAAAAATATCTTTATG 10524 Query 78116 CCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATA 78175 ||| ||||||| ||| ||||||||| | | || | |||| || || |||| ||||| Sbjct 10525 CCAAGGTTCTAAATAAATTGCCATACTACTTGATCTTCTATTGCCACCTTGATTAATATA 10584 Query 78176 T 78176 | Sbjct 10585 T 10585 >seq2 Length=91783 Score = 286 bits (316), Expect = 5e-72 Identities = 614/908 (68%), Gaps = 41/908 (5%) Strand=Plus/Minus Query 47849 TTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATT 47908 ||||||||||| | | | ||| || || ||||| ||||| ||| | || |||||| Sbjct 37512 TTTTTGATATTGTGACTCTCTTTTATCAAAGAAATTGGTTTTCCCTACTAAACTTATATT 37453 Query 47909 TTCCATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAATCCTAA-TTCTGAAA 47967 |||||||||||| || ||||| | || ||| ||| ||| | || |||||| || || Sbjct 37452 TTCCATAAAATCGAAGGGATTCAGTGTATTGTAATATTTCTCAAGTCCTAAATTAATTAA 37393 Query 47968 TCAGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTATAA 48027 | | |||||| || || ||||| |||||| ||| | | ||||||||| || |||| Sbjct 37392 TAA-TCTATCAGCTACAAATTCAATATATTGACACATAAGCTTACAATTCATCCCAATAA 37334 Query 48028 GTTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATC---CACTA 48084 | || || |||| | | | ||||| |||| || || || || || ||||| Sbjct 37333 GATTTACCGGTAAACTGACACTTAGAAATTCTTTCTCTATTTCTACCGCTTCTTTCACTA 37274 Query 48085 TTATCGA---TGT-TACCGTTTCCTCACTTGGTGGATACAACAAATGTTTAAACATTAAA 48140 | ||| | ||| | || || | | || |||| || | | ||| Sbjct 37273 T-ATCAAGAATGTGTGGCGATTTATTAATT------------AAATATTGATTTAGCAAA 37227 Query 48141 CATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGA 48200 || || || |||||||| | |||||||| ||| ||||||||| ||||| || || ||| Sbjct 37226 CAAGCGAAGTCACAATGCAACCCTTCATCCCTAGAAATTAATTCATTAGAGAAAGTAAGA 37167 Query 48201 CCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAAT 48260 || ||||| || || | || || ||||| || |||| ||| || | || ||||| ||| Sbjct 37166 CCAGGCATAAGACCTCTGTTCTTTAGCCAGAAGATTGACGCAAATGCGCCGGAAAAAAAT 37107 Query 48261 ATGCCTTCTACGGCCGCAAATGCGGTAAGTC-TCTCTCCGTAACTGGCTT--CGTTGTGT 48317 || ||||||||| |||||| || | | | | || | || || | | | Sbjct 37106 ATTCCTTCTACGCACGCAAAAGCAATGACGCGTGTCGCGAATGATGATTTTTCATCTTTA 37047 Query 48318 ATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTA 48377 ||||| ||||||| ||||| ||||| |||| ||| || || || ||| |||||| Sbjct 37046 ATCCATTTAAGTGCCCAGTCAGCTTTCTTTTTTATACATGGAATAGTACTTATCGCATTA 36987 Query 48378 AAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATT 48437 |||||| ||||||||| |||| ||| |||| ||||||||| | |||||| Sbjct 36986 AAGAGATGTGTTTTTTCATCTTGATCTGTAATATAAGCATCTATTAATAATGAATACATC 36927 Query 48438 TCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATC 48497 || ||||||||||| || || | |||||||| ||||| || | |||||| || Sbjct 36926 TCACTATGAATATTTTCTATGGCTACTTGAAATCCATAAAAGCACTTTGCTTCTAATAT- 36868 Query 48498 TGT-ACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGC 48556 ||| || || || |||| ||| | ||||| | || || || ||||| || || Sbjct 36867 TGTCACTTCATTAGCGAATCTCTCAACTAAATTGGCGTTAACAATACCATCTGACGCGGC 36808 Query 48557 AAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTAT----TCC 48612 |||||||||||| | || | |||||| ||| |||| || ||| || || || Sbjct 36807 AAAAAATGCTAAAATATTTGAAATAAAGTATCTTTCTTT----ATCATTTAATGATAACC 36752 Query 48613 AGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTT 48672 | ||||| | || | || ||| |||||||| | ||||| ||||||| ||| |||| Sbjct 36751 AATCATTTCTGTCGGCAGTTAGATCAACTTCTTCTACCGTCCAGAATGATGACTCGGCTT 36692 Query 48673 TTTTATACATATTCCATATATCACTGTATTGGATTGGGAAAATAACAAATCT------AT 48726 |||||||||| | |||||| ||| |||| || || || | |||| | || || Sbjct 36691 TTTTATACATCTGCCATATGTCATGATATTTAATAGGAAATAAAACATACCTTTCTTCAT 36632 Query 48727 TTGGATTT 48734 |||||||| Sbjct 36631 TTGGATTT 36624 >seq466 Length=27249 Score = 214 bits (236), Expect = 2e-50 Identities = 886/1379 (64%), Gaps = 34/1379 (2%) Strand=Plus/Minus Query 76775 ATCCAATGTAAACTGAATTGGAGAAGATGCGGGTTTTGTACGTAGATAGTACATACCAGT 76834 ||| | |||||||| |||| || | ||| |||| || | || ||||| ||||| Sbjct 26899 ATCTACTGTAAACTTTATTGCTGATGTAATAGGTCTTGTTCGCAAGTAATACATTCCAGT 26840 Query 76835 TTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATC 76894 ||| | || | ||||||| || |||||||| |||| | | | | || |||| | Sbjct 26839 TTTCAATCCTCGTTTCCATCCATAAAAATGCATACTTGATAATATCGGGTATGTAGGCTT 26780 Query 76895 GGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCAT 76954 || | | | ||| | || ||| ||||||||| || || || || || |||| Sbjct 26779 TGCAACAAATAAATTTAGAGATTGAGTTTGATCGACAAATGCCTGCCTGTCTGCTGCCAA 26720 Query 76955 TTTTATAATGGTCTTTTGAGG--AATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCA 77012 | |||| | ||| | ||||||||||| ||||| | | | ||| || || Sbjct 26719 ATCGATAACA--CATTTCATTTTAATTTCCCAAACTGTTTTATATAACTCTTTAATTTCC 26662 Query 77013 TCTGGAAGGT---TTGTATTTTGAATGGAACCACCATCTGATATAATTGTATTCTTTATA 77069 ||||||| || | ||||| || || || | | | | ||| ||| ||||| Sbjct 26661 TCTGGAATACCACTTATGTTTTGTATTGATCCTTCTTGTTCAACAATATAATTTTTTATT 26602 Query 77070 TCATCATTCCACAATTTCCTCTCTGTTAAAACTCTAAGGAGATGAGGATTAACTATTTGA 77129 ||| | ||||| || || | ||||| | | | |||| ||| || |||||| Sbjct 26601 TCAGGAGACCACATGTTAAGCTTTATTAAATCATTCATAAGATACCTATTTACCATTTGA 26542 Query 77130 AATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCA 77189 ||||||||| | | ||| | |||||| |||||| ||| ||||||| | | |||| Sbjct 26541 AATTCTCCACAAGCTGTTCTTCTAGTGTATATATTAGAAGTAAATGGTTCAAATGCTTCA 26482 Query 77190 TTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTATTT 77249 || || |||||||| | || || || ||||||||||| | |||||| |||| Sbjct 26481 TTATTATTAAAAATTTGTGATGTGCCTGCTGTAGGCATAGGTGCAATTAATAAAGAATTT 26422 Query 77250 CTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGAAG-- 77307 || | ||||| | || ||||| | | || | || ||||| ||| | | | || Sbjct 26421 CTAACACCATATTTTAAAATTTTTTTTCGTAACTCTTCCCAATTCCATCTACCGGTAGTA 26362 Query 77308 GTACAACATCCCAAAGATCGTATTGTAGAATTCCGTTACTAGCATATGATCCATTATATG 77367 | | || | || | || | || | ||| || |||||| |||||| ||||| | Sbjct 26361 GAAGAATTTGCC--ATTTCCCAGTGGAAAATGCCTTTACTAATTGGTGATCCGTTATAAG 26304 Query 77368 TTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCTTCCAATGCTCCGTAATAAA 77427 |||||| || || | | | ||||| |||||| | |||||| || || |||| | Sbjct 26303 ATTCATACGGCCCGTATTTCTCAGCCTCCTCACAAGAAGATTCCAAAGCACCAAAATATA 26244 Query 77428 TTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATCAAACGGATAATGTA 77487 |||||| || || | || || || | | |||| | || ||| | || |||| || Sbjct 26243 GTGTTTCAAATATTTCTTTGTTAAGTTTTCGTGCCCCTTCGCTTTCATAAGG-TAATCTA 26185 Query 77488 A-AAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTA 77546 | | | ||| |||| |||| ||| ||||| || | ||| ||||| |||||| || Sbjct 26184 AGCATTAAAAAAACATCGGCTAGTCCTTGAACACCCAGACCTATAGGCCTATGT---TTT 26128 Query 77547 TTGGAAATTTT---AGCTTCTGGAATAGGATAATAATTAATGTCTATAATTTTATTGAGA 77603 ||| | |||| |||||| || ||||||| | ||| || |||| | |||| | Sbjct 26127 TTGTTACTTTTCTCTGCTTCTTTAAGAGGATAAAAGTTACAATCAATAACTATATTAGCA 26068 Query 77604 TTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAA-GAAAATCAAATCTTCCATCTAT 77662 ||| || |||| ||| || || | |||| | || ||| |||||| ||||| || Sbjct 26067 TTTTTAGTTACTATTTTTACAAC-TGATTTAAATAAATTAAAGTCAAATTCTCCATTAAT 26009 Query 77663 AACAAACATGTTCAAAGCTATAGATGCTAGATTACAAACTGCTACCTCATTAGCGTTGGC 77722 ||||| | ||| |||| || | || || |||||||| |||| | ||| Sbjct 26008 TACAAATTTCGGTAAACATATACTAGCCAAGTTGCATACTGCTACTTCATCTGGACTGGT 25949 Query 77723 ATATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTT 77782 ||||||| || || ||||| || ||| |||| | || || || | ||| | ||| || Sbjct 25948 GTATTGTACAATTTCTGTACAGAGGTTAGAACATCTAATTGTACCAATATTCTTTTGATT 25889 Query 77783 GCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGA 77842 || ||||| | || ||||| | || | || || || |||||||| ||||| Sbjct 25888 ACTTAAATTATTTATAGTATCTTTATACAACATGTAGGGTGTACCAGTTTCAATTTGTGA 25829 Query 77843 TTCGATAATAGATTTCCAGACGACTCTAGCTTTTATCATAGATTTGTATCGCCTCTCTCT 77902 || ||||||| |||||||| | || | || | | ||| || | | | Sbjct 25828 CTCAATAATAGCCTTCCAGACCTTTTGTGC-AGGAACA-ACAACGCAATCAACT-TTTTT 25772 Query 77903 TTCATATTGA--GTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGG 77960 |||||| | | || ||| || |||||||| | || || ||| | |||||| Sbjct 25771 TTCATACTCAAGATACATATCC--TCAAATTCTTTACCGTAAGCATTTGAAAGTCCAGG- 25715 Query 77961 CATTCA---TTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAG 78017 | || ||||| || | |||||||| || | | ||| ||| | ||||||||| Sbjct 25714 --TACAGATTTTGGACAAAATAATGACCAATCCTCGTTAGCCTCAACCCTTTTCATAAAT 25657 Query 78018 AGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTA 78077 | |||| ||||| | || |||||| ||||| || ||| ||| || ||||| || Sbjct 25656 AAATCATTAATCCACATGCCAGTAAATACATCTCTGGCTCTTAATTCATCTTTTCCAATA 25597 Query 78078 TTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGC 78136 | ||| | | ||| | ||| || | || || ||||| || |||| ||| || || Sbjct 25596 CTTTTTCTTAAATCTAAAAAATCAAAGATGTCTTTGTGCCAGGGCTCTAAATAAATAGC 25538 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694664145719040