Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nosema_20ceranae_20[genbank_20GCA_5F000988165.1_202015-05-05] 536 sequences; 5,690,748 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq504 280 2e-70 seq2 269 4e-67 seq466 196 7e-45 >seq504 Length=119805 Score = 280 bits (310), Expect = 2e-70 Identities = 903/1385 (65%), Gaps = 26/1385 (2%) Strand=Plus/Plus Query 75400 TGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATG 75459 |||| ||| | || ||| ||||| |||||||||| || | || | || ||||| Sbjct 9214 TGGTCGTGTCCTTAAATAATACATGCCAGTTTTTAATCCGCTCTTAAATGCATAAAAATG 9273 Query 75460 CATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATA--TTCATCGACTGACTT 75517 ||| || ||||||| |||||| | || | || | ||||| || | |||||| | Sbjct 9274 CATACTGCTTAGTTTAGAATAAGTGGGCTGTGCCAC--GAATAAATTTAATGACTGAGAT 9331 Query 75518 TGATCGATGAAA-GCTCCTCTATCAGCCGCCATTTTTATAA--TGGTC--TTTTGAGGAA 75572 |||||||| ||| ||| | |||||| || | | ||| | || | |||| || Sbjct 9332 TGATCGATAAAAAGCTGA-CGATCAGCAGCTAAATCTATCACATGCTTCATTTTTAG--- 9387 Query 75573 TTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAA--GATTTG-TATTTTGAA 75629 |||||| |||||| ||| | ||| ||||| | ||| | ||||| ||||||| | Sbjct 9388 -TTCCCATGCAGTTTTATAAAGATCTTTAATATCCTGTGGTATAGATTTAATATTTTGTA 9446 Query 75630 TGGATCCGCCATCAGATATAATTGTATTCTTGATCTCATCATTCCACAATTTTCTCTCGG 75689 | ||||| ||| ||||| || || || |||| | ||| || ||| | Sbjct 9447 TTGATCCTTCATATTCAATAATCAGGTTTTTCATTTCATGAGACCATAAATTTAAATTAA 9506 Query 75690 TTAAAACTCTAAGGAGATGAGGATTAACAATTTGAAATTCTCCAGACAATACTCTTCGAG 75749 ||||| || | | | | |||| ||||||||||| ||||| | | ||||| || Sbjct 9507 TTAAATCTTTCAACAAGTATTGATTGACAATTTGAAACTCTCCTGCATGTGTTCTTCTAG 9566 Query 75750 TGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTTG 75809 | |||||||| || |||| || | ||||||| || |||||||||| ||| Sbjct 9567 TATAAATATTTGAAGTGAATGGCTCAAAGCATTCATTATTATTAAAAATTTGAGAAGTAC 9626 Query 75810 AAGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTAT 75869 |||||| |||||||| | || | | ||||||||| | ||||| || | || || | Sbjct 9627 TAGCAGTAGGCATAGGAGATACTAGAAGACTATTTCTCACCCCATGCTTTTTTATCTTTT 9686 Query 75870 CTTTTAGATATTTCCAATCCCAAAGATCTGATGGTACAACATCCCAGAGATCGTATTGTA 75929 || | || | ||||| | | || || | | || | || | || | Sbjct 9687 CTCTAAGTAAATTCCATTTTTCTAAATTTGGAACTTTTTTTTTGCATAACTCAAAGTGAA 9746 Query 75930 GAATTCCGTTGCT-AGCATATGATCCATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCT 75988 |||||| || || | | | || || ||||||| |||| || | | || || Sbjct 9747 AAATTCCTTTACTTAACGGA-GAGCCTGCGAATGTTTCATAAGGACCATATTCTTTTGCA 9805 Query 75989 AGTTCGCAACT--CGCCTCTAACGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTAA 76046 ||||| |||| | | || | || |||||||||||||| || || || ||| | Sbjct 9806 AGTTC--AACTGACTCTTCAAGAGCGGAATAATAAATTGTTTCAAATATTTTAAAATTTA 9863 Query 76047 GATCTTGCGCTTCAAGACTATCAAAAGGATAATGTAAAAGAATAAATGCATCTGCTAGTC 76106 |||| || | |||| ||||||||||| | | || | ||| |||||||| | || Sbjct 9864 AATCTCTAGCATTTTGACTGTCAAAAGGATATCGCATTAGTACAAAAGCATCTGCCAATC 9923 Query 76107 CCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTCAGCTTCTGGAATAG 76166 | || || || || |||||||||| ||||| || ||| | |||| | || Sbjct 9924 CTTGTACACCTATTCCAATAGGTCGGTGTCTAAAGTTACTCCTTTTACATTCTTCTACAG 9983 Query 76167 GGTAATAATTAATATCTATAATTTTATTGAGATTTCTGACAACTACTTTAACCACGTCCT 76226 | ||| | || | || ||| ||||| |||||||| | ||||| || | | Sbjct 9984 GATAAAATGTACTGTCAATACAATTATTTAGATTTCTTGTTATAACTTTTACAATTTTTG 10043 Query 76227 TTAGTTTGAGAAAATCAAATTTTCCATCTATCACAAACATATTAAGAGCTATAGATGCTA 76286 || | ||||||||||||||| ||| | ||||| |||| | | ||| | Sbjct 10044 ACAGCTCTTCAAAATCAAATTTTCCTTCTCTTACAAAACGTGAAAGACAAACACTTGCCA 10103 Query 76287 GATTACAAACGGCTACCTCATTAGCATTGGCATATTGTATTATCTCCGTGCATAGATTAC 76346 | |||||||| || | ||||| || || ||||| ||||| || | ||||| ||| Sbjct 10104 GGTTACAAACAGCAATTTCATTTTTATCGGAATATTCAATTATTTCTGCGCATAAATTTG 10163 Query 76347 TACACTTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTACATGAGTCCTTATAAA 76406 | || || | || | ||||||||| || || | | || |||| || ||||||| Sbjct 10164 ATGATTTTATTATGCCCAAATTTTGTTGATTACTTAATCTATTGCATGTATCTTTATAAA 10223 Query 76407 GAACAAACGGAGTTCCAGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAG 76466 | | | || || || ||||| || |||| ||| || || | ||||| | ||||| Sbjct 10224 GCATGTATGGTGTACCTGTTTCTATTTGTGCTTCAATTATTGCCTTCCACAATTTTCTAG 10283 Query 76467 CTTTTATTATAGATTTGTATCGCTTCTCTCTTTCATATTGTGTATATAACCGTTCAAATT 76526 |||| | | | || ||| || | || |||||||| ||| ||||| | ||| | Sbjct 10284 CTTTAACAACCG--TTCTATTTTTTGT-TCGTTCATATTTTGTGTATAATTTATTAAAAT 10340 Query 76527 CATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGACCACTCAC 76586 | || |||||||||||||| | ||| | || || || || | |||||||| || Sbjct 10341 CCTCGCCCCAAACATCATCGAGACCTTTAGCCTCGTTTGGGCAAAATAATGACCATTCTT 10400 Query 76587 CATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTC 76646 ||| || | ||| | || |||||| | |||| |||||| | ||| |||| | ||||| Sbjct 10401 CATTTTTGTCAACTCTTTCCATAAATAAATCATTTATCCACAATGCAGTAAAAATATCTC 10460 Query 76647 GGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAG 76706 | |||| |||||| |||| ||||| ||| | | ||||| || || | |||||| Sbjct 10461 TAGCTCTAATATCTTCACTTCCGGTATTTTTTCTTAAATCTAAAAAATCAAAAATATCTT 10520 Query 76707 AATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTA 76766 |||||| ||||||| ||| || |||||| || | || | |||| || || |||| | Sbjct 10521 TATGCCAAGGTTCTAAATAAATTGCCATACTACTTGATCTTCTATTGCCACCTTGATTAA 10580 Query 76767 TATAT 76771 ||||| Sbjct 10581 TATAT 10585 >seq2 Length=91783 Score = 269 bits (298), Expect = 4e-67 Identities = 602/888 (68%), Gaps = 43/888 (5%) Strand=Plus/Minus Query 46359 TTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTCCATAAAATCAAACGGATT 46418 ||| || || ||||| ||||| ||| | || |||||||||||||||||| || ||||| Sbjct 37491 TTTATCAAAGAAATTGGTTTTCCCTACTAAACTTATATTTTCCATAAAATCGAAGGGATT 37432 Query 46419 -AGTAACATTATAAAtttttttAAATCCTAA-TTCTGAAATCAGTCTATCTGCAACGAAT 46476 ||| ||| ||| ||| | || |||||| || ||| | |||||| || || ||| Sbjct 37431 CAGTGT-ATTGTAATATTTCTCAAGTCCTAAATTAATTAATAA-TCTATCAGCTACAAAT 37374 Query 46477 TCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAGTTTGACCGGTAGAGCCTCC 46536 || ||||| ||| | | ||||||||| || || || || ||||||| | | Sbjct 37373 TCAATATATTGACACATAAGCTTACAATTCATCCCAATAAGATTTACCGGTAAACTGACA 37314 Query 46537 GTAAGAAACTCTTGTTCAATAGTGACAGCATC---CGATATTATCGATGTTACTGTTTCC 46593 | ||||| |||| || || || || || | ||| ||| | | ||| | Sbjct 37313 CTTAGAAATTCTTTCTCTATTTCTACCGCTTCTTTCACTAT-ATCAAG---AATGTGTGG 37258 Query 46594 TCACTTGGTGGATGCATCAAATGTTTAAACATTAAACATGCAAAATCACAATGAAGGCCT 46653 | || || || |||| || | | ||||| || || |||||||| | ||| Sbjct 37257 CGATTT-----ATTAATTAAATATTGATTTAGCAAACAAGCGAAGTCACAATGCAACCCT 37203 Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 ||||| ||| ||||||||| ||||| || || || |||||||| || || | || || Sbjct 37202 TCATCCCTAGAAATTAATTCATTAGAGAAAGTAAGACCAGGCATAAGACCTCTGTTCTTT 37143 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGC- 46772 ||||| || || | ||| || | || ||||| ||||| |||||||| ||| || || Sbjct 37142 AGCCAGAAGATTGACGCAAATGCGCCGGAAAAAAATATTCCTTCTACGCACGCAAAAGCA 37083 Query 46773 --GACAAGTCTCTC---TCCGTAACTGGCATCATTATGAATCCACCTTTGAGCCCAATCA 46827 ||| || || | | | | |||| ||| ||||| | | ||||| ||| Sbjct 37082 ATGACGCGTGTCGCGAATGATGATTTTTCATCTTTA---ATCCATTTAAGTGCCCAGTCA 37026 Query 46828 GCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGtttttttCATCA 46887 || || || |||| ||| || || || ||| |||||||||||| |||||||||| Sbjct 37025 GCTTTCTTTTTTATACATGGAATAGTACTTATCGCATTAAAGAGATGTGTTTTTTCATCT 36966 Query 46888 CTATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATA 46947 |||| ||| ||| | ||||||||| | |||||| || |||||| ||||| || Sbjct 36965 TGATCTGTAATATAAGCATCTATTAATAATGAATACATCTCACTATGAATATTTTCTATG 36906 Query 46948 GCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAAT-CTGT-ACCTCTGTACAAAATC 47005 || | |||||||| ||||| || ||||||| |||| ||| || || || |||| Sbjct 36905 GCTACTTGAAATCCATAAAAGCACTTTGCTTC--TAATATTGTCACTTCATTAGCGAATC 36848 Query 47006 GTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTT 47065 ||| ||||| | || || || ||||| || ||||||||||| || | || | Sbjct 36847 TCTCAACTAAATTGGCGTTAACAATACCATCTGACGCGGCAAAAAATGCTAAAATATTTG 36788 Query 47066 TAATAAAATATTTTTCATCGGTAGTCAGTTTAT----TCCAGTCATTGATATCTTTTGAT 47121 |||||| ||| |||| | || ||| || || ||| ||||| | || | | Sbjct 36787 AAATAAAGTATCTTTCTT---TA-TCATTTAATGATAACCAATCATTTCTGTCGGCAGTT 36732 Query 47122 ATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATA 47181 | ||| |||||||| | ||||||||||| | ||| |||||||||||||| | |||||| Sbjct 36731 AGATCAACTTCTTCTACCGTCCAGAATGATGACTCGGCTTTTTTATACATCTGCCATATG 36672 Query 47182 TCACGATATTGGATCGGAAAAATAACAAATCT------ATTTGGATTT 47223 ||| |||||| || ||||| | |||| | || |||||||||| Sbjct 36671 TCATGATATTTAATAGGAAATAAAACATACCTTTCTTCATTTGGATTT 36624 >seq466 Length=27249 Score = 196 bits (216), Expect = 7e-45 Identities = 889/1391 (64%), Gaps = 40/1391 (3%) Strand=Plus/Minus Query 75401 GGTTTTGTACGTAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGC 75460 ||| |||| || | || ||||| |||||||| | || | ||||||| || |||||| Sbjct 26868 GGTCTTGTTCGCAAGTAATACATTCCAGTTTTCAATCCTCGTTTCCATCCATAAAAATGC 26809 Query 75461 ATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATATTCATCGACTGACTTTGA 75520 || |||| || | | | || | || | || | | | ||| | || ||| ||||| Sbjct 26808 ATACTTGATAATATCGGGTATGTAGGCTTTGCAACAAATAAATTTAGAGATTGAGTTTGA 26749 Query 75521 TCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGG--AATTTCCC 75578 |||| || || || || || |||| | |||| | ||| | |||||||| Sbjct 26748 TCGACAAATGCCTGCCTGTCTGCTGCCAAATCGATAACA--CATTTCATTTTAATTTCCC 26691 Query 75579 AAATAGTTTTGAAAACTTGTTTGATATCATCTGGAAGAT---TTGTATTTTGAATGGATC 75635 ||| ||||| | | | ||| || || ||||||| | || | ||||| || |||| Sbjct 26690 AAACTGTTTTATATAACTCTTTAATTTCCTCTGGAATACCACTTATGTTTTGTATTGATC 26631 Query 75636 CGCCATCAGATATAATTGTATTCTTGATCTCATCATTCCACAATTTTCTCTCGGTTAAAA 75695 | | | | ||| ||| || || ||| | ||||| || || ||||| Sbjct 26630 CTTCTTGTTCAACAATATAATTTTTTATTTCAGGAGACCACATGTTAAGCTTTATTAAAT 26571 Query 75696 CTCTAAGGAGATGAGGATTAACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGTAAA 75755 | | | |||| ||| || ||||||||||||||| | | ||||| |||||| | Sbjct 26570 CATTCATAAGATACCTATTTACCATTTGAAATTCTCCACAAGCTGTTCTTCTAGTGTATA 26511 Query 75756 TATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAG 75815 ||||| ||| ||||||| | | |||||| || |||||||| | || || | Sbjct 26510 TATTAGAAGTAAATGGTTCAAATGCTTCATTATTATTAAAAATTTGTGATGTGCCTGCTG 26451 Query 75816 TCGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTA 75875 | ||||||||||| | |||||| |||||| | ||||| | || ||||| | | || Sbjct 26450 TAGGCATAGGTGCAATTAATAAAGAATTTCTAACACCATATTTTAAAATTTTTTTTCGTA 26391 Query 75876 GATATTTCCAATCCCAAAGATCTGATGGTACAACA---TCCCAGAGATCGTATTGTAGAA 75932 | || ||||| ||| | | | | ||| || | | ||| || | || | || Sbjct 26390 ACTCTTCCCAATTCCATCTACCGG-TAGTAGAAGAATTTGCCATT--TCCCAGTGGAAAA 26334 Query 75933 TTCCGTTGCTAGCATATGATCCATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTT 75992 | || || ||| |||||| ||||| | ||| || | ||||| || ||||| | Sbjct 26333 TGCCTTTACTAATTGGTGATCCGTTATAAGATTCATACGGCCCGTATTTCTCAGCCTCCT 26274 Query 75993 CGCAACTCGCCTCTAACGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTAAGATCTT 76052 | ||| | || || ||||| |||| | |||||| || || | || ||||| | | Sbjct 26273 CACAAGAAGATTCCAAAGCACCAAAATATAGTGTTTCAAATATTTCTTTGTTAAGTTTTC 26214 Query 76053 GCGCTTCAAGACTATCAAAAGGATAATGTAAA-AGAATAAATGCATCTGCTAGTCCCTGA 76111 | || | || ||| |||| |||| ||| | | ||| |||| |||||||| ||| Sbjct 26213 GTGCCCCTTCGCTTTCATAAGG-TAATCTAAGCATTAAAAAAACATCGGCTAGTCCTTGA 26155 Query 76112 ACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAA 76171 || || | ||| ||||| |||||| | || || | || |||||| || ||| ||| Sbjct 26154 ACACCCAGACCTATAGGCCTATGTTTTTTGTTACTTTTCTCTGCTTCTTTAAGAGGATAA 26095 Query 76172 TAATTAATATCTATAATTTTATTGAGATTTCTGACAACTACTTTAACCACGTCCTTTAGT 76231 | ||| ||| |||| | |||| |||| | |||| ||| || || | |||| Sbjct 26094 AAGTTACAATCAATAACTATATTAGCATTTTTAGTTACTATTTTTACAAC-TGATTTAAA 26036 Query 76232 TTGAGAAAA-TCAAATTTTCCATCTATCACAAACATATTAAGAGCTATAGATGCTAGATT 76290 | | ||| ||||||| ||||| || ||||| | | | |||| || | || Sbjct 26035 TAAATTAAAGTCAAATTCTCCATTAATTACAAATTTCGGTAAACATATACTAGCCAAGTT 25976 Query 76291 ACAAACGGCTACCTCATTAGCATTGGCATATTGTATTATCTCCGTGCATAGATTACTACA 76350 || || ||||| |||| | | ||| ||||||| || || || || || ||| ||| Sbjct 25975 GCATACTGCTACTTCATCTGGACTGGTGTATTGTACAATTTCTGTACAGAGGTTAGAACA 25916 Query 76351 CTTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTACATGAGTCCTTATAAAGAAC 76410 | || || |||| ||| | ||| || || || || | || ||||| | | Sbjct 25915 TCTAATTGTACCAATATTCTTTTGATTACTTAAATTATTTATAGTATCTTTATACAACAT 25856 Query 76411 AAACGGAGTTCCAGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTT 76470 | || || ||||||||||| ||||| || ||||||| |||||||| |||| Sbjct 25855 GTAGGGTGTACCAGTTTCAATTTGTGACTCAATAATAGCCTTCCAGAC--------CTTT 25804 Query 76471 TATTATAGATTTGTATCGC-TTC----TCTCTTTCATATT--GTGTATATAACCGTTCAA 76523 | | || | ||| || | | ||||||| | || ||| || |||| Sbjct 25803 TGTGCAGGAACAACAACGCAATCAACTTTTTTTTCATACTCAAGATACATATCC--TCAA 25746 Query 76524 ATTCATCTCCCCAAACATCATCCAAA--CCAGG-ACATTCATTCGGACACATCAATGACC 76580 |||| | || || ||| | ||| ||||| ||| || ||||| | ||||||| Sbjct 25745 ATTCTTTACCGTAAGCAT--TTGAAAGTCCAGGTACA-GATTTTGGACAAAATAATGACC 25689 Query 76581 ACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATA 76640 | || | | ||| ||||| ||||||||| | |||| ||||| | || |||||| Sbjct 25688 AATCCTCGTTAGCCTCAACCCTTTTCATAAATAAATCATTAATCCACATGCCAGTAAATA 25629 Query 76641 GATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAA 76700 ||||| || ||| ||| || ||||| || | ||| | | ||||| || || | | Sbjct 25628 CATCTCTGGCTCTTAATTCATCTTTTCCAATACTTTTTCTTAAATCTAAAAAATCAAAGA 25569 Query 76701 TATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTCCCT 76760 | || ||||| || |||| ||| || || ||||| || | || | ||| | | Sbjct 25568 TGTCTTTGTGCCAGGGCTCTAAATAAATAGCAGGGCAACCCGATCTTCTACTTCCTGCTT 25509 Query 76761 GATCTATATAT 76771 || | |||||| Sbjct 25508 GACCAATATAT 25498 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712929623339520