Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nosema_20ceranae_20[genbank_20GCA_5F000988165.1_202015-05-05] 536 sequences; 5,690,748 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq2 286 4e-72 >seq2 Length=91783 Score = 286 bits (316), Expect = 4e-72 Identities = 579/852 (68%), Gaps = 22/852 (3%) Strand=Plus/Minus Query 23242 TCGAAAAAATTTGTCTTACCCTCTAATGATATATTTTCCATAAAATCAAATGGATTAGAA 23301 || || ||||| || || || |||| |||||||||||||||||| || ||||| Sbjct 37487 TCAAAGAAATTGGTTTTCCCTACTAAACTTATATTTTCCATAAAATCGAAGGGATTCAGT 37428 Query 23302 GTATTATATACAGCTTTACA-TGATAATTCCTTTAAAAGCCTATCTGCTACAAATTCAAT 23360 ||||| || | | | | | | ||| | |||| | ||||| |||||||||||||| Sbjct 37427 GTATTGTA-ATATTTCTCAAGTCCTAAATTAATTAATAATCTATCAGCTACAAATTCAAT 37369 Query 23361 ATATTGACACATCAAATCATAGTTTATACCTATTAGTTTTACTGG-AATCGCATCATATA 23419 |||||||||||| | | | | || || || || || ||||| || || | | || || Sbjct 37368 ATATTGACACATAAGCTTACAATTCATCCCAATAAGATTTACCGGTAAACTGA-CACTTA 37310 Query 23420 AGAATAGTTTTTCAATGGAAACAGCATCTTTAATTATTTGAACAATAACTTCTTCACTAG 23479 ||| ||| || || || || ||||| | ||| | || ||| | | Sbjct 37309 GAAATTCTTTCTCTATTTCTACCGCTTCTTTCACTATATCAAGAATGTGT---------G 37259 Query 23480 GTGGAT-ATT--TTAAATACTTAAACAATAAACATGCAAAATCACAATGTAGGCCTTCAT 23536 | | | ||| ||||||| | | | ||||| || || |||||||| | ||||||| Sbjct 37258 GCGATTTATTAATTAAATATTGATTTAGCAAACAAGCGAAGTCACAATGCAACCCTTCAT 37199 Query 23537 CCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTTTAATCC 23596 ||||| ||| ||||||||||| || || | || ||||| | |||| || || | || Sbjct 37198 CCCTAGAAATTAATTCATTAGAGAAAGTAAGACCAGGCATAAGACCTCTGTTCTTTAGCC 37139 Query 23597 AAAATATTGCAGCAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCCACAA 23656 | || |||| ||||||| |||||||| || || || || || |||||| || | | Sbjct 37138 AGAAGATTGACGCAAATGCGCCGGAAAAAAATATTCCTTCTACGCACGCAAAAGCAATGA 37079 Query 23657 GACGTGTACCAAATGTTGCATTATAATCAGAAATCCAtttttttGTCCAATTAGCCTTCA 23716 ||||| | |||| || || | ||| ||||||||| || ||| | ||| ||| Sbjct 37078 CGCGTGTCGCGAATGATGATTTTTCATCTTTAATCCATTTAAGTGCCCAGTCAGCTTTCT 37019 Query 23717 ATTTTACACACTCAATTGTTTCAATTGCTTTTAAGAGAAAAGTTTTTTCTTCATTATCTG 23776 ||||| ||| ||| || || || || |||||| |||||||| || | ||||| Sbjct 37018 TTTTTATACATGGAATAGTACTTATCGCATTAAAGAGATGTGTTTTTTCATCTTGATCTG 36959 Query 23777 TTATATATGTATCAATTAGTAAACTATACATTTCAGAATGAATATTTTCAATAGCAATCT 23836 | ||||| | ||| |||| ||| |||||| ||| |||||||||||| || || | | Sbjct 36958 TAATATAAGCATCTATTAATAATGAATACATCTCACTATGAATATTTTCTATGGCTACTT 36899 Query 23837 GAAACCCATAAAAACATCTAGCTTCAGACAATTGAACATCATTAAAAAATCTTTTAGCTA 23896 |||| |||||||| || | ||||| | | | || |||||| ||||| | | ||| Sbjct 36898 GAAATCCATAAAAGCACTTTGCTTCTAATATTGTCACTTCATTAGCGAATCTCTCAACTA 36839 Query 23897 AATTTTCGTTAACAATACCATCACTAGCAGCAAAGAAAGCAAGAACATATTTTATAAAAT 23956 |||| |||||||||||||||| || ||||| || || | || || | ||||| | Sbjct 36838 AATTGGCGTTAACAATACCATCTGACGCGGCAAAAAATGCTAAAATATTTGAAATAAAGT 36779 Query 23957 GTCTTTC---ATCAGTTGATAATTTTTTCCAATCATTAATATCTTTTGATAAATCAACTT 24013 |||||| |||| | |||| | ||||||||| | || | || |||||||| Sbjct 36778 ATCTTTCTTTATCATT---TAATGATAACCAATCATTTCTGTCGGCAGTTAGATCAACTT 36722 Query 24014 CATCAACTGTCCAAAAACTTGCCAAGGCACGCTTATACATTAGCCAAATATCATTATGTT 24073 | || || ||||| || || | ||| |||||||| |||| || |||| || || Sbjct 36721 CTTCTACCGTCCAGAATGATGACTCGGCTTTTTTATACATCTGCCATATGTCATGATATT 36662 Query 24074 GTATTGGAAATA 24085 || ||||||| Sbjct 36661 TAATAGGAAATA 36650 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521484506030400