Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nosema_20ceranae_20[genbank_20GCA_5F000988165.1_202015-05-05] 536 sequences; 5,690,748 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq478 116 9e-21 seq35 93.3 1e-13 >seq478 Length=25159 Score = 116 bits (128), Expect = 9e-21 Identities = 165/229 (72%), Gaps = 5/229 (2%) Strand=Plus/Minus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| |||| || || ||||| || ||||||||||| || || | || || || Sbjct 21856 AAAATGC---AAATATTTGTAAAAACGCTAACAGGAAAAACTATTACTTTAGACGTAGAG 21800 Query 177975 AGCTCA-GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCC 178033 || | ||| |||| || || || ||| || ||||| |||||||||||||| || || Sbjct 21799 T-CTAATGACTCCATTGAAAATGTAAAAGCTAAAATTCAAGACAAAGAAGGAATACCACC 21741 Query 178034 GGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGA 178093 || || || || | || || || || |||||||| |||||||| ||||| ||| || Sbjct 21740 AGATCAACAGAGATTGATTTTTGCTGGTAAACAGCTTGAAGATGGTAGGACACTTAGTGA 21681 Query 178094 TTATAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 ||| || | || |||||| || | ||||| ||||| ||| | ||| Sbjct 21680 TTACAATATACAGAAAGAAAGTACTTTACATCTAGTTTTAAGATTAAGA 21632 >seq35 Length=73508 Score = 93.3 bits (102), Expect = 1e-13 Identities = 152/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || || || |||||||||||||| || || | || || ||| || Sbjct 17039 CAAATATTTGTAAAGACACTCACAGGAAAAACAATTACTTTAGATGTTGAACCGGGGGAT 17098 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | || || || || || || || || || |||||||| || || || || || || Sbjct 17099 TCTATAGAAAATGTAAAGGCTAAAATACAAGATAAAGAAGGTATACCACCAGATCAACAG 17158 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||||| || || || || || | ||||||||||| || ||| || |||||| | Sbjct 17159 AGACTTATATTTGCAGGTAAGCAATTGGAAGATGGAAGAACACTTAATGACTATAACATT 17218 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 ||||||||| || ||||| | || |||||| | ||| Sbjct 17219 CAAAAAGAAAGTACTTTGCATTTGGTGTTGAGATTAAGA 17257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203722933375984