Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoloma_20neurophilia_20[genbank_20GCA_5F001432165.1_202015-11- 05] 1,603 sequences; 5,248,409 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq495 116 4e-21 >seq495 Length=2372 Score = 116 bits (128), Expect = 4e-21 Identities = 562/873 (64%), Gaps = 47/873 (5%) Strand=Plus/Plus Query 16688 ACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCTCCATGAAATCAAAA 16747 || ||||| || |||||||| ||||| || | || || ||||| |||||||||||||| Sbjct 293 ACACGTTTCTCAAAAAAGTTGGTTTTACCTTGTAATGAAATATTTTCCATGAAATCAAAT 352 Query 16748 GGATTA---GTAGCTGAAAATATTTTAGAGTACCCCAGTTCGGCGATTAATCTATCCGCT 16804 || || ||| ||| | ||||| | | | | || | | | ||| ||| Sbjct 353 GGGTTGTTCGTATTATAAACTTTTTTACAAT---CAAAATCTTGTAAGATGCCATCTGCT 409 Query 16805 ACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGACGTACCGGAAGA 16864 || ||||||| ||||| |||||| | | || ||||| |||||||| || || | Sbjct 410 ACGAATTCTACATATTTGCACATGGAATTACAATTCATACCTATAAGTGAGACAGGCAAT 469 Query 16865 GCTTCCGTCAAAAA-TCGTTGCTCTATAACAACCGCTTCCTTAATAAT-------ACTAG 16916 | | | | ||| || || |||||| | || |||||| | | ||| |||| Sbjct 470 GAAACATTAACAAACTCCTT-CTCTATTTCTACTGCTTCCATCACAATTTGTTTGACTAT 528 Query 16917 CAACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACATGCGAAATCGC 16976 | || || | || | || |||||||| | || | | || || | | Sbjct 529 C---TCTTTATTT--ACCTT--ATTTTTAAGATATGAGTGTATTAAAACGGCAAATTTGT 581 Query 16977 AATGTAATCCCTCGTCTC-TGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTT 17035 ||||||| ||||| |||| || | || || || || |||||||||| || |||||||| Sbjct 582 AATGTAAGCCCTCATCTCGTGAT-ATGAGCTCATTTGAAAATGTCAGACCAGGCATCTTG 640 Query 17036 CCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACG 17095 |||| |||||||||||| || || | || || || || || || | ||| || || Sbjct 641 CCTCTTTTCTTTAACCAGAAGATGGATGCAAAGGAAGAGGAGAAAAAAAGACCTTCTACA 700 Query 17096 GATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCATTT-CTG 17154 ||||||| || || |||| | || || | ||||| ||||||||| Sbjct 701 CATGCAAATGCTATCAATCTGATAGAATA-GT--CCTCTTTTGAGTCAATCCATTTGAAA 757 Query 17155 CACCCACTCGGCTTTTT---GCTTTATGCAATCCATCGTTTCTATGGCCTTAA--ATAAT 17209 |||| | | | |||||| || ||| ||| || ||| || || |||| | || Sbjct 758 CACCAATTAGCCTTTTTCTCAATTGATGGAAT--AT--TTTTGATTGCGTTAAACAGAAA 813 Query 17210 TTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAG 17269 | | ||| | | || || | ||||| || || || | | |||||| || || Sbjct 814 GTGTTTTTGTTCGTTA--TCTTTAATATAAGTGTCAATTAACAAAGAGTACATCTCAGAA 871 Query 17270 TGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACT 17329 || ||||| || || ||||| ||||||||||| ||| ||||| | |||| | Sbjct 872 TGGATGTTTTCTATCATAATCTGGAATCCGTAAAAACATTTTGCTTCTTTAAGCTGAATT 931 Query 17330 TCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAAC 17389 || | |||| ||| || |||||| || ||||| ||||| || || |||||||| Sbjct 932 TCTCTTGAAAATCTTTCTAATAAATTTTCATTTACGATTCCGTCACTTGCAGCGAAAAAT 991 Query 17390 GC--CAATATATGCTTAATGAAATATT--TTTCGTCCGGTGTAAGAACGCGCCAGTCCTT 17445 || || || || | |||||||||| | | | | | ||||| | || || Sbjct 992 GCAAGAACATTTGAT--ATGAAATATTGCTCACTTTCTTTTAAAGAA--TTAAAATCATT 1047 Query 17446 TAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTTTTTATA 17505 ||||| || | ||| |||||||| ||||| ||| | || || | ||||| Sbjct 1048 CAAATCACGTGAAAGATCAACTTCTTCAACTGTCCAGAAAGAGGAAACCGCATGCTTATA 1107 Query 17506 CATATTCCAAATATCATTGTATTGTATGGGGAA 17538 ||| | ||||||||||| || || ||| || || Sbjct 1108 CATTTGCCAAATATCATGGTGTTCTATTGGAAA 1140 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517535229680040