Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudoloma_20neurophilia_20[genbank_20GCA_5F001432165.1_202015-11-
05] 1,603 sequences; 5,248,409 total letters
Query= NC_001132.2
Length=161773
Score E
Sequences producing significant alignments: (Bits) Value
seq495 116 4e-21
>seq495
Length=2372
Score = 116 bits (128), Expect = 4e-21
Identities = 562/873 (64%), Gaps = 47/873 (5%)
Strand=Plus/Plus
Query 16688 ACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCTCCATGAAATCAAAA 16747
|| ||||| || |||||||| ||||| || | || || ||||| ||||||||||||||
Sbjct 293 ACACGTTTCTCAAAAAAGTTGGTTTTACCTTGTAATGAAATATTTTCCATGAAATCAAAT 352
Query 16748 GGATTA---GTAGCTGAAAATATTTTAGAGTACCCCAGTTCGGCGATTAATCTATCCGCT 16804
|| || ||| ||| | ||||| | | | | || | | | ||| |||
Sbjct 353 GGGTTGTTCGTATTATAAACTTTTTTACAAT---CAAAATCTTGTAAGATGCCATCTGCT 409
Query 16805 ACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGACGTACCGGAAGA 16864
|| ||||||| ||||| |||||| | | || ||||| |||||||| || || |
Sbjct 410 ACGAATTCTACATATTTGCACATGGAATTACAATTCATACCTATAAGTGAGACAGGCAAT 469
Query 16865 GCTTCCGTCAAAAA-TCGTTGCTCTATAACAACCGCTTCCTTAATAAT-------ACTAG 16916
| | | | ||| || || |||||| | || |||||| | | ||| ||||
Sbjct 470 GAAACATTAACAAACTCCTT-CTCTATTTCTACTGCTTCCATCACAATTTGTTTGACTAT 528
Query 16917 CAACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACATGCGAAATCGC 16976
| || || | || | || |||||||| | || | | || || | |
Sbjct 529 C---TCTTTATTT--ACCTT--ATTTTTAAGATATGAGTGTATTAAAACGGCAAATTTGT 581
Query 16977 AATGTAATCCCTCGTCTC-TGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTT 17035
||||||| ||||| |||| || | || || || || |||||||||| || ||||||||
Sbjct 582 AATGTAAGCCCTCATCTCGTGAT-ATGAGCTCATTTGAAAATGTCAGACCAGGCATCTTG 640
Query 17036 CCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACG 17095
|||| |||||||||||| || || | || || || || || || | ||| || ||
Sbjct 641 CCTCTTTTCTTTAACCAGAAGATGGATGCAAAGGAAGAGGAGAAAAAAAGACCTTCTACA 700
Query 17096 GATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCATTT-CTG 17154
||||||| || || |||| | || || | ||||| |||||||||
Sbjct 701 CATGCAAATGCTATCAATCTGATAGAATA-GT--CCTCTTTTGAGTCAATCCATTTGAAA 757
Query 17155 CACCCACTCGGCTTTTT---GCTTTATGCAATCCATCGTTTCTATGGCCTTAA--ATAAT 17209
|||| | | | |||||| || ||| ||| || ||| || || |||| | ||
Sbjct 758 CACCAATTAGCCTTTTTCTCAATTGATGGAAT--AT--TTTTGATTGCGTTAAACAGAAA 813
Query 17210 TTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAG 17269
| | ||| | | || || | ||||| || || || | | |||||| || ||
Sbjct 814 GTGTTTTTGTTCGTTA--TCTTTAATATAAGTGTCAATTAACAAAGAGTACATCTCAGAA 871
Query 17270 TGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACT 17329
|| ||||| || || ||||| ||||||||||| ||| ||||| | |||| |
Sbjct 872 TGGATGTTTTCTATCATAATCTGGAATCCGTAAAAACATTTTGCTTCTTTAAGCTGAATT 931
Query 17330 TCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAAC 17389
|| | |||| ||| || |||||| || ||||| ||||| || || ||||||||
Sbjct 932 TCTCTTGAAAATCTTTCTAATAAATTTTCATTTACGATTCCGTCACTTGCAGCGAAAAAT 991
Query 17390 GC--CAATATATGCTTAATGAAATATT--TTTCGTCCGGTGTAAGAACGCGCCAGTCCTT 17445
|| || || || | |||||||||| | | | | | ||||| | || ||
Sbjct 992 GCAAGAACATTTGAT--ATGAAATATTGCTCACTTTCTTTTAAAGAA--TTAAAATCATT 1047
Query 17446 TAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTTTTTATA 17505
||||| || | ||| |||||||| ||||| ||| | || || | |||||
Sbjct 1048 CAAATCACGTGAAAGATCAACTTCTTCAACTGTCCAGAAAGAGGAAACCGCATGCTTATA 1107
Query 17506 CATATTCCAAATATCATTGTATTGTATGGGGAA 17538
||| | ||||||||||| || || ||| || ||
Sbjct 1108 CATTTGCCAAATATCATGGTGTTCTATTGGAAA 1140
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 517535229680040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |