Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoloma_20neurophilia_20[genbank_20GCA_5F001432165.1_202015-11- 05] 1,603 sequences; 5,248,409 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq495 122 9e-23 >seq495 Length=2372 Score = 122 bits (134), Expect = 9e-23 Identities = 375/569 (66%), Gaps = 17/569 (3%) Strand=Plus/Plus Query 16215 AATGTAGTCCTTCGTCTC-TGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTT 16273 |||||| || || |||| || | || || || || ||||| || | || ||||| || Sbjct 582 AATGTAAGCCCTCATCTCGTGAT-ATGAGCTCATTTGAAAATGTCAGACCAGGCATCTTG 640 Query 16274 CCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACA 16333 |||| ||||||||||||||| || | ||||| || || || || | ||| || ||| Sbjct 641 CCTCTTTTCTTTAACCAGAAGATGGATGCAAAGGAAGAGGAGAAAAAAAGACCTTCTACA 700 Query 16334 GATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGAATCCATTTCTGT 16393 ||||||| || || |||| | || || | ||||| ||||||||| Sbjct 701 CATGCAAATGCTATCAATCTGATAGAATA-GT--CCTCTTTTGAGTCAATCCATTTGAAA 757 Query 16394 -ACCCATTCGGCTTTTTGT---TTTATACAATCCATCGTTTCTATGGCCTTAAACAATTT 16449 ||| ||| | |||||| | || || ||| || ||| || || ||||||| Sbjct 758 CACCAATTAGCCTTTTTCTCAATTGATGGAAT--AT--TTTTGATTGCGTTAAACAGAAA 813 Query 16450 CTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACATTTCTGAGTG 16509 | ||||| | |||| | ||||| || ||||| | ||| |||||| || || || Sbjct 814 GTGTTTTTGTTCGTTATCTTTAATATAAGTGTCAATTAACAAAGAGTACATCTCAGAATG 873 Query 16510 TATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTC 16569 ||||| ||||| ||||| ||||| || || ||| || || | || | ||| Sbjct 874 GATGTTTTCTATCATAATCTGGAATCCGTAAAAACATTTTGCTTCTTTAAGCTGAATTTC 933 Query 16570 CACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGC 16629 |||||| ||| | || ||||| ||||| |||||||||||||| ||||| || Sbjct 934 TCTTGAAAATCTTTCTAATAAATTTTCATTTACGATTCCGTCACTTGCAGCGAAAAATGC 993 Query 16630 CA--ATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATATGCCAATCTTTTAAA 16687 | | || || | |||||||||| || | | | | || |||| || ||| Sbjct 994 AAGAACATTTGAT--ATGAAATATTGCTCACTTTCTTTTAAAGAATTAAAATCATTCAAA 1051 Query 16688 TCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCTTTTTATACATT 16747 || || | ||| |||||||| ||||| || | || || | ||||||||| Sbjct 1052 TCACGTGAAAGATCAACTTCTTCAACTGTCCAGAAAGAGGAAACCGCATGCTTATACATT 1111 Query 16748 TTCCAAATATCATTGTATTGTATGGGAAA 16776 | ||||||||||| || || ||| ||||| Sbjct 1112 TGCCAAATATCATGGTGTTCTATTGGAAA 1140 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511404152533960