Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudoloma_20neurophilia_20[genbank_20GCA_5F001432165.1_202015-11-
05] 1,603 sequences; 5,248,409 total letters
Query= NC_001348.1
Length=124884
Score E
Sequences producing significant alignments: (Bits) Value
seq1143 100 2e-16
>seq1143
Length=6170
Score = 100 bits (110), Expect = 2e-16
Identities = 276/419 (66%), Gaps = 8/419 (2%)
Strand=Plus/Plus
Query 18789 GGGGACCTTGGCCCCATTTACGGCTTCCAGTGGAGACATTTTGGAGCGGAATATAAAGAC 18848
|| || ||||| || || || || || || |||||||||| || || |||| |||
Sbjct 5469 GGTGATCTTGGACCAATCTATGGGTTTCAATGGAGACATTGCGGTGCAAAATACAAAACT 5528
Query 18849 TGTCAATCAAACTATTTAC--AG--CAAGGAATCGATCAGCTGCAAACTGTTATAGATAC 18904
||||| | | || |||| || ||||| || || || | || | || | |||
Sbjct 5529 TGTCA-TGA---TAATTACGAAGGTCAAGGTATTGACCAATTACAGAACCTTCTCGATGG 5584
Query 18905 AATTAAAACAAACCCAGAAAGCCGACGAATGATTATATCGTCTTGGAATCCAAAGGATAT 18964
|||||| | | || | || || || ||| | |||||||| || | || |||
Sbjct 5585 AATTAAGAATGATCCGTATGGCAGAAGACATATTGTCAGTTCTTGGAACCCTATGGCTAT 5644
Query 18965 CCCCTTAATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAACGGTGA 19024
|||| |||||| ||||||||||| || | |||| | | || | | ||| |
Sbjct 5645 AAAAGAGATGGCACTACCACCATGTCACACATTTTTTCAGGTAATCATTACTGAAGGTAA 5704
Query 19025 ATTATCCTGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACAT 19084
|||| | ||||||| ||||||| ||| | || ||||| ||||| ||||| ||
Sbjct 5705 ATTAAACCTTATTTTATACCAAAGATCGGCAGATGTTGGGCTTGGTGTACCATTCAATAT 5764
Query 19085 TGCTGGATATGCACTTCTTACCTACATAGTAGCGCATGTTACAGGACTTAAAACCGGAGA 19144
||| |||||| ||||||| | || | || | | || ||| | | |||||||
Sbjct 5765 TGCATCATATGCTATTCTTACTAAGATCATCGCTTTTATGACTGGATATGAGGCCGGAGA 5824
Query 19145 TTTAATTCATACAATGGGGGATGCACATATTTACTTGAATCATATAGATGCTTTAAAAG 19203
|| |||||| |||| ||| |||||||||| |||||||| ||||| | ||||
Sbjct 5825 GTTCATTCATTTTATGGCAGATTGCCATATTTACTCAAATCATATTGATGCCCTGAAAG 5883
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 399496195065135
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |