Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoloma_20neurophilia_20[genbank_20GCA_5F001432165.1_202015-11- 05] 1,603 sequences; 5,248,409 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq1143 100 2e-16 >seq1143 Length=6170 Score = 100 bits (110), Expect = 2e-16 Identities = 276/419 (66%), Gaps = 8/419 (2%) Strand=Plus/Plus Query 18789 GGGGACCTTGGCCCCATTTACGGCTTCCAGTGGAGACATTTTGGAGCGGAATATAAAGAC 18848 || || ||||| || || || || || || |||||||||| || || |||| ||| Sbjct 5469 GGTGATCTTGGACCAATCTATGGGTTTCAATGGAGACATTGCGGTGCAAAATACAAAACT 5528 Query 18849 TGTCAATCAAACTATTTAC--AG--CAAGGAATCGATCAGCTGCAAACTGTTATAGATAC 18904 ||||| | | || |||| || ||||| || || || | || | || | ||| Sbjct 5529 TGTCA-TGA---TAATTACGAAGGTCAAGGTATTGACCAATTACAGAACCTTCTCGATGG 5584 Query 18905 AATTAAAACAAACCCAGAAAGCCGACGAATGATTATATCGTCTTGGAATCCAAAGGATAT 18964 |||||| | | || | || || || ||| | |||||||| || | || ||| Sbjct 5585 AATTAAGAATGATCCGTATGGCAGAAGACATATTGTCAGTTCTTGGAACCCTATGGCTAT 5644 Query 18965 CCCCTTAATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAACGGTGA 19024 |||| |||||| ||||||||||| || | |||| | | || | | ||| | Sbjct 5645 AAAAGAGATGGCACTACCACCATGTCACACATTTTTTCAGGTAATCATTACTGAAGGTAA 5704 Query 19025 ATTATCCTGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACAT 19084 |||| | ||||||| ||||||| ||| | || ||||| ||||| ||||| || Sbjct 5705 ATTAAACCTTATTTTATACCAAAGATCGGCAGATGTTGGGCTTGGTGTACCATTCAATAT 5764 Query 19085 TGCTGGATATGCACTTCTTACCTACATAGTAGCGCATGTTACAGGACTTAAAACCGGAGA 19144 ||| |||||| ||||||| | || | || | | || ||| | | ||||||| Sbjct 5765 TGCATCATATGCTATTCTTACTAAGATCATCGCTTTTATGACTGGATATGAGGCCGGAGA 5824 Query 19145 TTTAATTCATACAATGGGGGATGCACATATTTACTTGAATCATATAGATGCTTTAAAAG 19203 || |||||| |||| ||| |||||||||| |||||||| ||||| | |||| Sbjct 5825 GTTCATTCATTTTATGGCAGATTGCCATATTTACTCAAATCATATTGATGCCCTGAAAG 5883 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399496195065135