Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudoloma_20neurophilia_20[genbank_20GCA_5F001432165.1_202015-11-
05] 1,603 sequences; 5,248,409 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq495 237 2e-57
seq1321 105 8e-18
>seq495
Length=2372
Score = 237 bits (262), Expect = 2e-57
Identities = 580/871 (67%), Gaps = 10/871 (1%)
Strand=Plus/Plus
Query 23843 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATT 23902
|||||| |||||| |||||||| || ||||| || |||||||||| |||||| |||||
Sbjct 277 TTTTTGATATTCAGATACACGTTTCTCAAAAAAGTTGGTTTTACCTTGTAATGAAATATT 336
Query 23903 TTCCATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTA-AATCCCAATTCAGAAA 23961
|||||||||||| |||| ||| | |||||| | | ||||| |||| ||| | ||
Sbjct 337 TTCCATGAAATCAAATGGGTTGTTCGTATTATAAACTTTTTTACAATCAAAATCTTGTAA 396
Query 23962 TCAATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCATTCCTATAA 24021
| | |||||| || || || | |||| | ||| | ||||||||| |||||||
Sbjct 397 G-ATGCCATCTGCTACGAATTCTACATATTTGCACATGGAATTACAATTCATACCTATAA 455
Query 24022 GTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAA 24081
|| || || | | ||| ||| ||| || | || || || || || | | ||
Sbjct 456 GTGAGACAGGCAATGAAACATTAACAAACTCCTTCTCTATTTCTACTGCTTCCATCACAA 515
Query 24082 TAGATCTTACTGTTTCTTCACT--CGGTGGATACAATAAATGTTTAAACATCAAACATGC 24139
| | | ||| | |||| | | | | | || | ||| | | | |||| ||
Sbjct 516 TTTGTTTGACTATCTCTTTATTTACCTTATTTTTAAGATATGAGTGTAT-TAAAACG-GC 573
Query 24140 GAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGG 24199
|| | | | |||| ||||| |||| || | || || ||||| || || || ||
Sbjct 574 AAATTTGTAATGTAAGCCCTCATCTCGTGATATGAGCTCATTTGAAAATGTCAGACCAGG 633
Query 24200 CATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCC 24259
||| ||| | || || | ||| || ||||| ||||| || || || |||| ||
Sbjct 634 CATCTTGCCTCTTTTCTTTAACCAGAAGATGGATGCAAAGGAAGAGGAGAAAAAAAGACC 693
Query 24260 TTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTGTCATGT--ATCCAC 24317
|||||| ||||| || || | ||| ||| | | || | || |||||
Sbjct 694 TTCTACACATGCAAATGCTATCAATCTGATAGAATAGTC--CTCTTTTGAGTCAATCCAT 751
Query 24318 TTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGA 24377
|| | ||||| ||||| || | | | || || | | || || ||||| |||
Sbjct 752 TTGAAACACCAATTAGCCTTTTTCTCAATTGATGGAATATTTTTGATTGCGTTAAACAGA 811
Query 24378 TAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAA 24437
||| ||||| | ||||||||| ||| || ||||| || | | ||||| || |||
Sbjct 812 AAGTGTTTTTGTTCGTTATCTTTAATATAAGTGTCAATTAACAAAGAGTACATCTCAGAA 871
Query 24438 TGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACT 24497
|| |||||||| || || || |||||||| |||||| | || || ||| ||| | |
Sbjct 872 TGGATGTTTTCTATCATAATCTGGAATCCGTAAAAACATTTTGCTTCTTTAAGCTGAATT 931
Query 24498 TCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAAC 24557
||| | |||||| |||| |||||||||||| || ||||||||||| || || |||||
Sbjct 932 TCTCTTGAAAATCTTTCTAATAAATTTTCATTTACGATTCCGTCACTTGCAGCGAAAAAT 991
Query 24558 GCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATA 24617
|| | |||| | ||| ||||||| || | | ||| ||| ||||||| | |
Sbjct 992 GCAAGAACATTTGATATGAAATATTGCTCACTTTCTTTTAAAGAATTAAAATCATTCAAA 1051
Query 24618 TCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATA 24677
|| || | ||| |||||||| |||||||| || || | | || | ||||||||
Sbjct 1052 TCACGTGAAAGATCAACTTCTTCAACTGTCCAGAAAGAGGAAACCGCATGCTTATACATT 1111
Query 24678 TTCCAGATGTCATGATATTGAATTGGAAAAA 24708
| ||| || ||||| | || ||||||||||
Sbjct 1112 TGCCAAATATCATGGTGTTCTATTGGAAAAA 1142
>seq1321
Length=4813
Score = 105 bits (116), Expect = 8e-18
Identities = 170/239 (71%), Gaps = 4/239 (2%)
Strand=Plus/Plus
Query 54008 GACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA 54067
||||||| ||| || || || || |||| |||||| | |||||||||||| | ||| ||
Sbjct 3553 GACCACTGTCCATCTTCTTTGACACGTTCCATAAACAAATCAGGAATCCATAATGCTGTA 3612
Query 54068 AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCC 54127
|| ||||||| || || || || |||||||| ||||| | || | ||| |
Sbjct 3613 AACAGATCTCGACATCGCATCTCTTCTTTACCTGTATTTTTTTTCAACTCTATGAATTCT 3672
Query 54128 ATAATATCAGAATGCCACGGTTCCAAGT-ATATGGTCATAACTCCAGGCCGTTTGTTTCC 54186
| ||| ||| |||||| |||||||| | | ||| ||| | ||||| ||||| | ||
Sbjct 3673 AGAATGTCAACATGCCATGGTTCCAAATAAAATGCGCAT-GCACCAGGGCGTTTTTGACC 3731
Query 54187 TCCCTGATCTATGTATCT-AGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 54244
|||||||| ||| |||| ||| || | | | ||| | |||| | ||| | ||| |||
Sbjct 3732 ACCCTGATCGATGCATCTGAGC-GTACTCTCAAAAATTTTCAAAACTGGTACAATTCCA 3789
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593709703303440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |