Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoloma_20neurophilia_20[genbank_20GCA_5F001432165.1_202015-11- 05] 1,603 sequences; 5,248,409 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq495 237 2e-57 seq1321 105 8e-18 >seq495 Length=2372 Score = 237 bits (262), Expect = 2e-57 Identities = 580/871 (67%), Gaps = 10/871 (1%) Strand=Plus/Plus Query 23843 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATT 23902 |||||| |||||| |||||||| || ||||| || |||||||||| |||||| ||||| Sbjct 277 TTTTTGATATTCAGATACACGTTTCTCAAAAAAGTTGGTTTTACCTTGTAATGAAATATT 336 Query 23903 TTCCATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTA-AATCCCAATTCAGAAA 23961 |||||||||||| |||| ||| | |||||| | | ||||| |||| ||| | || Sbjct 337 TTCCATGAAATCAAATGGGTTGTTCGTATTATAAACTTTTTTACAATCAAAATCTTGTAA 396 Query 23962 TCAATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCATTCCTATAA 24021 | | |||||| || || || | |||| | ||| | ||||||||| ||||||| Sbjct 397 G-ATGCCATCTGCTACGAATTCTACATATTTGCACATGGAATTACAATTCATACCTATAA 455 Query 24022 GTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAA 24081 || || || | | ||| ||| ||| || | || || || || || | | || Sbjct 456 GTGAGACAGGCAATGAAACATTAACAAACTCCTTCTCTATTTCTACTGCTTCCATCACAA 515 Query 24082 TAGATCTTACTGTTTCTTCACT--CGGTGGATACAATAAATGTTTAAACATCAAACATGC 24139 | | | ||| | |||| | | | | | || | ||| | | | |||| || Sbjct 516 TTTGTTTGACTATCTCTTTATTTACCTTATTTTTAAGATATGAGTGTAT-TAAAACG-GC 573 Query 24140 GAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGG 24199 || | | | |||| ||||| |||| || | || || ||||| || || || || Sbjct 574 AAATTTGTAATGTAAGCCCTCATCTCGTGATATGAGCTCATTTGAAAATGTCAGACCAGG 633 Query 24200 CATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCC 24259 ||| ||| | || || | ||| || ||||| ||||| || || || |||| || Sbjct 634 CATCTTGCCTCTTTTCTTTAACCAGAAGATGGATGCAAAGGAAGAGGAGAAAAAAAGACC 693 Query 24260 TTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTGTCATGT--ATCCAC 24317 |||||| ||||| || || | ||| ||| | | || | || ||||| Sbjct 694 TTCTACACATGCAAATGCTATCAATCTGATAGAATAGTC--CTCTTTTGAGTCAATCCAT 751 Query 24318 TTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGA 24377 || | ||||| ||||| || | | | || || | | || || ||||| ||| Sbjct 752 TTGAAACACCAATTAGCCTTTTTCTCAATTGATGGAATATTTTTGATTGCGTTAAACAGA 811 Query 24378 TAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAA 24437 ||| ||||| | ||||||||| ||| || ||||| || | | ||||| || ||| Sbjct 812 AAGTGTTTTTGTTCGTTATCTTTAATATAAGTGTCAATTAACAAAGAGTACATCTCAGAA 871 Query 24438 TGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACT 24497 || |||||||| || || || |||||||| |||||| | || || ||| ||| | | Sbjct 872 TGGATGTTTTCTATCATAATCTGGAATCCGTAAAAACATTTTGCTTCTTTAAGCTGAATT 931 Query 24498 TCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAAC 24557 ||| | |||||| |||| |||||||||||| || ||||||||||| || || ||||| Sbjct 932 TCTCTTGAAAATCTTTCTAATAAATTTTCATTTACGATTCCGTCACTTGCAGCGAAAAAT 991 Query 24558 GCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATA 24617 || | |||| | ||| ||||||| || | | ||| ||| ||||||| | | Sbjct 992 GCAAGAACATTTGATATGAAATATTGCTCACTTTCTTTTAAAGAATTAAAATCATTCAAA 1051 Query 24618 TCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATA 24677 || || | ||| |||||||| |||||||| || || | | || | |||||||| Sbjct 1052 TCACGTGAAAGATCAACTTCTTCAACTGTCCAGAAAGAGGAAACCGCATGCTTATACATT 1111 Query 24678 TTCCAGATGTCATGATATTGAATTGGAAAAA 24708 | ||| || ||||| | || |||||||||| Sbjct 1112 TGCCAAATATCATGGTGTTCTATTGGAAAAA 1142 >seq1321 Length=4813 Score = 105 bits (116), Expect = 8e-18 Identities = 170/239 (71%), Gaps = 4/239 (2%) Strand=Plus/Plus Query 54008 GACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA 54067 ||||||| ||| || || || || |||| |||||| | |||||||||||| | ||| || Sbjct 3553 GACCACTGTCCATCTTCTTTGACACGTTCCATAAACAAATCAGGAATCCATAATGCTGTA 3612 Query 54068 AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCC 54127 || ||||||| || || || || |||||||| ||||| | || | ||| | Sbjct 3613 AACAGATCTCGACATCGCATCTCTTCTTTACCTGTATTTTTTTTCAACTCTATGAATTCT 3672 Query 54128 ATAATATCAGAATGCCACGGTTCCAAGT-ATATGGTCATAACTCCAGGCCGTTTGTTTCC 54186 | ||| ||| |||||| |||||||| | | ||| ||| | ||||| ||||| | || Sbjct 3673 AGAATGTCAACATGCCATGGTTCCAAATAAAATGCGCAT-GCACCAGGGCGTTTTTGACC 3731 Query 54187 TCCCTGATCTATGTATCT-AGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 54244 |||||||| ||| |||| ||| || | | | ||| | |||| | ||| | ||| ||| Sbjct 3732 ACCCTGATCGATGCATCTGAGC-GTACTCTCAAAAATTTTCAAAACTGGTACAATTCCA 3789 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593709703303440