Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudoloma_20neurophilia_20[genbank_20GCA_5F001432165.1_202015-11-
05] 1,603 sequences; 5,248,409 total letters
Query= NC_002520.1
Length=232392
Score E
Sequences producing significant alignments: (Bits) Value
seq41 152 8e-32
>seq41
Length=3466
Score = 152 bits (168), Expect = 8e-32
Identities = 175/242 (72%), Gaps = 1/242 (0%)
Strand=Plus/Minus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110
|||||||| | |||||| || |||||||||||| |||||| |||||||||||||
Sbjct 3199 CCACCTCTTAATCTTAAAACTAAATGTAAAGTACTTTCTTTTTGAATATTATAATCTGCT 3140
Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170
| ||||| | ||| ||||||||||| || ||||| || |||||||| ||||| || |||
Sbjct 3139 AATGTTCTTCCATCTTCTAATTGTTTACCTGCAAATATTAATCTTTGTTGATCAGGTGGA 3080
Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230
|| |||||||||||||| | ||| || ||| |||
Sbjct 3079 ATACCTTCTTTATCTTGAATTTTTGCTTTTACATTTTCAATTGAATCAGATGGTTCAACT 3020
Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT-TTTATTAGAAAA 146289
|| | ||| || |||||||||||||||||||||| || |||||||| |||| || |||
Sbjct 3019 TCCAATGTTATAGTTTTACCTGTTAATGTTTTAACAAAAATTTGCATCTTTAATAATAAA 2960
Query 146290 AT 146291
||
Sbjct 2959 AT 2958
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 743511501589760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |