Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoloma_20neurophilia_20[genbank_20GCA_5F001432165.1_202015-11- 05] 1,603 sequences; 5,248,409 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq495 208 7e-49 >seq495 Length=2372 Score = 208 bits (230), Expect = 7e-49 Identities = 574/873 (66%), Gaps = 15/873 (2%) Strand=Plus/Plus Query 15943 TTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATT 16002 ||||||||||||| || | || ||||| || || ||||| |||| |||||||||||| Sbjct 277 TTTTTGATATTCAGATACACGTTTCTCAAAAAAGTTGGTTTTACCTTGTAATGAAATATT 336 Query 16003 TTCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCATCCCAATTCCAACAA 16062 |||||| |||||||| || || || | | ||| ||| | || | || || || Sbjct 337 TTCCATGAAATCAAATGGGTTGTTCGTATTATAAACTTTTTTACAATCAAAATCTTGTAA 396 Query 16063 TAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTAA 16122 | | ||| || || ||||||| ||| | ||| ||| ||| ||||| ||||| | Sbjct 397 GATGCCATCTGCTACGAATTCTACATATTTGCACATGGAATTACAATTCATACCTATAAG 456 Query 16123 TTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATTAT 16182 | ||||| | || | | | ||| | || ||||| | || ||||| || | || Sbjct 457 TGAGACAGGCAATGAAACATTAACAAACTCCTTCTCTATTTCTACTGCTTCCATCACAAT 516 Query 16183 ATCTCTTACTA---CACTATTTAACGGAGGGTTTA-ATAAGTGTTTAAACATTATACAAG 16238 | | | |||| | |||||| | | || | ||| | || || ||| | | Sbjct 517 TTGTTTGACTATCTCTTTATTTACCTTATTTTTAAGATATGAGTGTA----TTAAAACGG 572 Query 16239 CAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTG 16298 |||| | |||| || || || || | ||| | ||| ||||||||||| ||||| | Sbjct 573 CAAATTTGTAATGTAAGCCCTCATCTCGTGATATGAGCTCATTTGAAAATGTCAGACCAG 632 Query 16299 GCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATAC 16358 |||| |||| ||| || | ||| || || | ||||| ||| || || || | || Sbjct 633 GCATCTTGCCTCTTTTCTTTAACCAGAAGATGGATGCAAAGGAAGAGGAGAAAAAAAGAC 692 Query 16359 CTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttctatcc 16418 |||| || |||||||| | ||||| | || || || |||| | || |||| Sbjct 693 CTTCTACACATGCAAATGCTATCAATCTGATAGAATA-GTCCTCTTTTGA--GTCAATCC 749 Query 16419 attttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTAAATA 16478 |||| | |||||| || |||| | || | || || | ||||| ||||| | Sbjct 750 ATTTGAAACACCAATTAGCCTTTTTCTCAATTGATGGAATATTTTTGATTGCGTTAAACA 809 Query 16479 AATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTG 16538 | | | ||||| || | ||||| ||||||||| || |||| ||| ||||| || | Sbjct 810 GAAAGTGTTTTTGTTCGTTATCTTTAATATAAGTGTCAATTAACAAAGAGTACATCTCAG 869 Query 16539 AATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTA 16598 |||| || || || || ||||| || || ||||| ||| | ||||| | || | Sbjct 870 AATGGATGTTTTCTATCATAATCTGGAATCCGTAAAAACATTTTGCTTCTTTAAGCTGAA 929 Query 16599 CTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAA 16658 ||| |||| |||||| ||| ||||| || || ||||| || || || || |||| Sbjct 930 TTTCTCTTGAAAATCTTTCTAATAAATTTTCATTTACGATTCCGTCACTTGCAGCGAAAA 989 Query 16659 ACGCAAGTATGTGTTTAATAAAAtttt--tttCGTTATCTGAAAGTTTTAACCAGTCAGA 16716 | ||||| | | | || |||| || | | || | | |||| |||| | ||| Sbjct 990 ATGCAAGAACATTTGATATGAAATATTGCTCACTTTCTTTTAAAGAATTAA--AATCATT 1047 Query 16717 AAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCTTTTTATA 16776 ||||| ||| | ||| || ||||| || ||||| ||||| | ||| || | ||||| Sbjct 1048 CAAATCACGTGAAAGATCAACTTCTTCAACTGTCCAGAAAGAGGAAACCGCATGCTTATA 1107 Query 16777 CATTTTCCATATGTCTTCGTAAACAATAGGAAA 16809 ||||| ||| || || | || | || ||||| Sbjct 1108 CATTTGCCAAATATCATGGTGTTCTATTGGAAA 1140 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462502732415800