Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoloma_20neurophilia_20[genbank_20GCA_5F001432165.1_202015-11- 05] 1,603 sequences; 5,248,409 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq41 113 3e-20 >seq41 Length=3466 Score = 113 bits (124), Expect = 3e-20 Identities = 179/251 (71%), Gaps = 7/251 (3%) Strand=Plus/Minus Query 18084 TTTTCTTTTTGTTATCCTCCCCGTAGTCTAAGTACCA--TGTGAAGTGTTGATTCTTTTT 18141 |||||||||| ||| || || | || ||| | || | ||| |||| | |||||||| Sbjct 3213 TTTTCTTTTTTTTA-CCACCTCTTAATCTTAAAACTAAATGTAAAGTACT--TTCTTTTT 3157 Query 18142 GAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTC 18201 |||| || || || || | |||| | | |||||| |||||||| || ||| | || | || Sbjct 3156 GAATATTATAATCTGCTAATGTTCTTCCATCTTCTAATTGTTTACCTGCAAATATTAATC 3097 Query 18202 TTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACA 18260 |||||||||| || | ||||| ||||| ||||| |||| || || | | ||| Sbjct 3096 TTTGTTGATCAGGTGGAATACCTTCTTTATCTTGAATTT-TTGCTTTTACATTTTCAATT 3038 Query 18261 GTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATT 18320 | ||| || || ||| | || || |||| || || |||||||| ||||||||| Sbjct 3037 GAATCAGATGGTTCAACTTCCAATGTTATAGTTTTACCTGTTAATGTTTTAACAAAAATT 2978 Query 18321 TGCATTTTTAA 18331 ||||| ||||| Sbjct 2977 TGCATCTTTAA 2967 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379336588922235