Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoloma_20neurophilia_20[genbank_20GCA_5F001432165.1_202015-11- 05] 1,603 sequences; 5,248,409 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq495 118 9e-22 seq41 84.2 2e-11 >seq495 Length=2372 Score = 118 bits (130), Expect = 9e-22 Identities = 363/559 (65%), Gaps = 13/559 (2%) Strand=Plus/Minus Query 57549 TTTCCGATTGAATATCCAGACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGG 57608 ||||| || ||| | | || |||||| | ||||| || | || | | || || ||| Sbjct 1140 TTTCCAATAGAACACCATGATATTTGGCAAATGTATAAGCATGCGGTTTCCTCTTTCTGG 1081 Query 57609 ACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGATTGGGATTCCCTCAAAGAATCT 57668 || || |||||||| || || || ||| ||| |||| |||| | |||||| | Sbjct 1080 ACAGTTGAAGAAGTTGATCTTTCACGTGATTTGAATGATTTTAATTCTTTAAAAGAAAGT 1021 Query 57669 GAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAAC 57728 ||| | |||| || | | || | || |||||||| ||| || || || || || Sbjct 1020 GAGCAATATTTCATATCAAATGTTCTTGCATTTTTCGCTGCAAGTGACGGAATCGTAAAT 961 Query 57729 GAGAATTTGGTCGAAAGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTAC 57788 || ||||| | |||||||||||| |||| | || | | || || | ||| |||||| Sbjct 960 GAAAATTTATTAGAAAGATTTTCAAGAGAAATTCAGCTTAAAGAAGCAAAATGTTTTTAC 901 Query 57789 GGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACG 57848 ||||| || | || |||||| | ||||| || ||||| || | | || || || Sbjct 900 GGATTCCAGATTATGATAGAAAACATCCATTCTGAGATGTACTCTTTGTTAATTGACACT 841 Query 57849 TACGTGAAGGACAACGACGAGAAACGTAGACTGTTCAACGCGATCGAAACAATGCCCGCG 57908 || | || || ||||| | |||| ||||| ||||| ||| ||| || || | Sbjct 840 TATATTAAAGATAACGAACAAAAACACTTTCTGTTTAACGCAATCAAAAATATTCCATCA 781 Query 57909 ATCGCCAAGAAGGCAGAGTGGTCAATCAAATGGA-----TAAAAAGCGCCACGGCCACGT 57963 || | || ||||| | |||| ||||||||| | ||||| | | | | | Sbjct 780 ATTGAGAAAAAGGCTAATTGGTGTTTCAAATGGATTGACTCAAAAG----AGGACTA--T 727 Query 57964 TCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTG 58023 || ||| | || || || || || |||||| | || || || ||||| Sbjct 726 TCTATCAGA--TTGATAGCATTTGCATGTGTAGAAGGTCTTTTTTTCTCCTCTTCCTTTG 669 Query 58024 CGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGT 58083 | | || || ||| | |||||| | ||| |||||| || ||||| ||| || ||| Sbjct 668 CATCCATCTTCTGGTTAAAGAAAAGAGGCAAGATGCCTGGTCTGACATTTTCAAATGAGC 609 Query 58084 TGATATCGCGCGACGAGGG 58102 | ||||| || || ||||| Sbjct 608 TCATATCACGAGATGAGGG 590 >seq41 Length=3466 Score = 84.2 bits (92), Expect = 2e-11 Identities = 164/240 (68%), Gaps = 2/240 (1%) Strand=Plus/Plus Query 31186 ATCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGA 31245 || ||| ||||||||||| || || || | ||||| ||||| || || | || ||||| Sbjct 2966 ATTAAAGATGCAAATTTTTGTTAAAACATTAACAGGTAAAACTATAACATTGGAAGTTGA 3025 Query 31246 ACCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCC 31305 ||| || || | |||| || ||| | ||| || || ||||| | || || Sbjct 3026 ACCATCTGATTCAATTGAAAATGTAAAAGCAAAAATTCAAGATAAAGAAGGTATTCCACC 3085 Query 31306 CGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGC-G 31364 || || || | ||||||| || || ||||| || ||||| | | || || ||| | Sbjct 3086 TGATCAACAAAGATTAATATTTGCAGGTAAACAATTAGAAGA-TGGAAGAACATTAGCAG 3144 Query 31365 ATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTAGAA 31424 ||||||| |||||||||||| ||| | ||| | || | ||| | || || |||| || Sbjct 3145 ATTATAATATTCAAAAAGAAAGTACTTTACATTTAGTTTTAAGATTAAGAGGTGGTAAAA 3204 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445757467955760