Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudoloma_20neurophilia_20[genbank_20GCA_5F001432165.1_202015-11-
05] 1,603 sequences; 5,248,409 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq495 237 2e-57
seq1321 104 3e-17
>seq495
Length=2372
Score = 237 bits (262), Expect = 2e-57
Identities = 580/871 (67%), Gaps = 10/871 (1%)
Strand=Plus/Plus
Query 33290 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATT 33349
|||||| |||||| |||||||| || ||||| || ||||| |||| ||||| |||||
Sbjct 277 TTTTTGATATTCAGATACACGTTTCTCAAAAAAGTTGGTTTTACCTTGTAATGAAATATT 336
Query 33350 TTCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttA-AATCCCAATTCAGAAA 33408
||||||||||||||| || ||| | ||| |||| ||||||| |||| ||| | ||
Sbjct 337 TTCCATGAAATCAAATGGGTTGTTCGTATTATAAACTTTTTTACAATCAAAATCTTGTAA 396
Query 33409 TCAATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGA 33468
| | |||||| |||||||||| |||| | ||| | ||||||||| ||||| |
Sbjct 397 G-ATGCCATCTGCTACGAATTCTACATATTTGCACATGGAATTACAATTCATACCTATAA 455
Query 33469 GTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATAA 33528
|| || || | | ||| ||| ||| || | || || ||| || | | | ||
Sbjct 456 GTGAGACAGGCAATGAAACATTAACAAACTCCTTCTCTATTTCTACTGCTTCCATCACAA 515
Query 33529 TAAATCTAACGGTTTCTTCACT--CGGTGGATGTAATAAATGTTTAAACATCAAACATGC 33586
| | | || | |||| | | | | | ||| | ||| | | | |||| ||
Sbjct 516 TTTGTTTGACTATCTCTTTATTTACCTTATTTTTAAGATATGAGTGTAT-TAAAACG-GC 573
Query 33587 GAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGG 33646
|| | | | || | ||||| |||| || | || || ||||| || || || ||
Sbjct 574 AAATTTGTAATGTAAGCCCTCATCTCGTGATATGAGCTCATTTGAAAATGTCAGACCAGG 633
Query 33647 CATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCC 33706
||| ||| | || || | ||| || ||||| || || || ||| || || | ||
Sbjct 634 CATCTTGCCTCTTTTCTTTAACCAGAAGATGGATGCAAAGGAAGAGGAGAAAAAAAGACC 693
Query 33707 TTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGT--ATCCAC 33764
|||||| ||||| || || | ||| ||| | | || | || |||||
Sbjct 694 TTCTACACATGCAAATGCTATCAATCTGATAGAATAGTC--CTCTTTTGAGTCAATCCAT 751
Query 33765 TTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGA 33824
|| | ||||| ||||| || | | | || || ||| || || ||||| |||
Sbjct 752 TTGAAACACCAATTAGCCTTTTTCTCAATTGATGGAATATTTTTGATTGCGTTAAACAGA 811
Query 33825 TAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAA 33884
||| ||||| | ||||||||| |||||| || || || | | ||||| || |||
Sbjct 812 AAGTGTTTTTGTTCGTTATCTTTAATATAAGTGTCAATTAACAAAGAGTACATCTCAGAA 871
Query 33885 TGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACT 33944
|| |||||||| || ||||| |||||||| |||||| | || || ||| ||| | |
Sbjct 872 TGGATGTTTTCTATCATAATCTGGAATCCGTAAAAACATTTTGCTTCTTTAAGCTGAATT 931
Query 33945 TCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAAC 34004
||| | |||||| |||| |||||||||||| || ||||| ||||| || || |||||
Sbjct 932 TCTCTTGAAAATCTTTCTAATAAATTTTCATTTACGATTCCGTCACTTGCAGCGAAAAAT 991
Query 34005 GCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATA 34064
|| | |||| | ||| ||||||| || | | ||| ||| ||||||| | |
Sbjct 992 GCAAGAACATTTGATATGAAATATTGCTCACTTTCTTTTAAAGAATTAAAATCATTCAAA 1051
Query 34065 TCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATA 34124
|| || | ||| |||||||| |||||||| || || | | || | ||||||||
Sbjct 1052 TCACGTGAAAGATCAACTTCTTCAACTGTCCAGAAAGAGGAAACCGCATGCTTATACATT 1111
Query 34125 TTCCAGATGTCATGATATTGGATTGGGAAAA 34155
| ||| || ||||| | || ||||| ||||
Sbjct 1112 TGCCAAATATCATGGTGTTCTATTGGAAAAA 1142
>seq1321
Length=4813
Score = 104 bits (114), Expect = 3e-17
Identities = 169/238 (71%), Gaps = 4/238 (2%)
Strand=Plus/Plus
Query 63246 GACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA 63305
||||||| ||| || || || || |||| |||||| | |||||||||||| | ||| ||
Sbjct 3553 GACCACTGTCCATCTTCTTTGACACGTTCCATAAACAAATCAGGAATCCATAATGCTGTA 3612
Query 63306 AATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCC 63365
|| ||||||| || || || || |||||||| ||||| | || | ||| |
Sbjct 3613 AACAGATCTCGACATCGCATCTCTTCTTTACCTGTATTTTTTTTCAACTCTATGAATTCT 3672
Query 63366 ATAATATCAGAATGCCACGGTTCCAAGT-ATATGGCCATAACTCCAGGCCGTTTGTTTCC 63424
| ||| ||| |||||| |||||||| | | ||| ||| | ||||| ||||| | ||
Sbjct 3673 AGAATGTCAACATGCCATGGTTCCAAATAAAATGCGCAT-GCACCAGGGCGTTTTTGACC 3731
Query 63425 TCCCTGATCTATGTATCT-AGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63481
|||||||| ||| |||| ||| || | | | ||| | |||| | ||| | ||| ||
Sbjct 3732 ACCCTGATCGATGCATCTGAGC-GTACTCTCAAAAATTTTCAAAACTGGTACAATTCC 3788
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629804980029840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |