Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoloma_20neurophilia_20[genbank_20GCA_5F001432165.1_202015-11- 05] 1,603 sequences; 5,248,409 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq495 237 2e-57 seq1321 104 3e-17 >seq495 Length=2372 Score = 237 bits (262), Expect = 2e-57 Identities = 580/871 (67%), Gaps = 10/871 (1%) Strand=Plus/Plus Query 33290 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATT 33349 |||||| |||||| |||||||| || ||||| || ||||| |||| ||||| ||||| Sbjct 277 TTTTTGATATTCAGATACACGTTTCTCAAAAAAGTTGGTTTTACCTTGTAATGAAATATT 336 Query 33350 TTCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttA-AATCCCAATTCAGAAA 33408 ||||||||||||||| || ||| | ||| |||| ||||||| |||| ||| | || Sbjct 337 TTCCATGAAATCAAATGGGTTGTTCGTATTATAAACTTTTTTACAATCAAAATCTTGTAA 396 Query 33409 TCAATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGA 33468 | | |||||| |||||||||| |||| | ||| | ||||||||| ||||| | Sbjct 397 G-ATGCCATCTGCTACGAATTCTACATATTTGCACATGGAATTACAATTCATACCTATAA 455 Query 33469 GTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATAA 33528 || || || | | ||| ||| ||| || | || || ||| || | | | || Sbjct 456 GTGAGACAGGCAATGAAACATTAACAAACTCCTTCTCTATTTCTACTGCTTCCATCACAA 515 Query 33529 TAAATCTAACGGTTTCTTCACT--CGGTGGATGTAATAAATGTTTAAACATCAAACATGC 33586 | | | || | |||| | | | | | ||| | ||| | | | |||| || Sbjct 516 TTTGTTTGACTATCTCTTTATTTACCTTATTTTTAAGATATGAGTGTAT-TAAAACG-GC 573 Query 33587 GAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGG 33646 || | | | || | ||||| |||| || | || || ||||| || || || || Sbjct 574 AAATTTGTAATGTAAGCCCTCATCTCGTGATATGAGCTCATTTGAAAATGTCAGACCAGG 633 Query 33647 CATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCC 33706 ||| ||| | || || | ||| || ||||| || || || ||| || || | || Sbjct 634 CATCTTGCCTCTTTTCTTTAACCAGAAGATGGATGCAAAGGAAGAGGAGAAAAAAAGACC 693 Query 33707 TTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGT--ATCCAC 33764 |||||| ||||| || || | ||| ||| | | || | || ||||| Sbjct 694 TTCTACACATGCAAATGCTATCAATCTGATAGAATAGTC--CTCTTTTGAGTCAATCCAT 751 Query 33765 TTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGA 33824 || | ||||| ||||| || | | | || || ||| || || ||||| ||| Sbjct 752 TTGAAACACCAATTAGCCTTTTTCTCAATTGATGGAATATTTTTGATTGCGTTAAACAGA 811 Query 33825 TAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAA 33884 ||| ||||| | ||||||||| |||||| || || || | | ||||| || ||| Sbjct 812 AAGTGTTTTTGTTCGTTATCTTTAATATAAGTGTCAATTAACAAAGAGTACATCTCAGAA 871 Query 33885 TGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACT 33944 || |||||||| || ||||| |||||||| |||||| | || || ||| ||| | | Sbjct 872 TGGATGTTTTCTATCATAATCTGGAATCCGTAAAAACATTTTGCTTCTTTAAGCTGAATT 931 Query 33945 TCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAAC 34004 ||| | |||||| |||| |||||||||||| || ||||| ||||| || || ||||| Sbjct 932 TCTCTTGAAAATCTTTCTAATAAATTTTCATTTACGATTCCGTCACTTGCAGCGAAAAAT 991 Query 34005 GCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATA 34064 || | |||| | ||| ||||||| || | | ||| ||| ||||||| | | Sbjct 992 GCAAGAACATTTGATATGAAATATTGCTCACTTTCTTTTAAAGAATTAAAATCATTCAAA 1051 Query 34065 TCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATA 34124 || || | ||| |||||||| |||||||| || || | | || | |||||||| Sbjct 1052 TCACGTGAAAGATCAACTTCTTCAACTGTCCAGAAAGAGGAAACCGCATGCTTATACATT 1111 Query 34125 TTCCAGATGTCATGATATTGGATTGGGAAAA 34155 | ||| || ||||| | || ||||| |||| Sbjct 1112 TGCCAAATATCATGGTGTTCTATTGGAAAAA 1142 >seq1321 Length=4813 Score = 104 bits (114), Expect = 3e-17 Identities = 169/238 (71%), Gaps = 4/238 (2%) Strand=Plus/Plus Query 63246 GACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA 63305 ||||||| ||| || || || || |||| |||||| | |||||||||||| | ||| || Sbjct 3553 GACCACTGTCCATCTTCTTTGACACGTTCCATAAACAAATCAGGAATCCATAATGCTGTA 3612 Query 63306 AATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCC 63365 || ||||||| || || || || |||||||| ||||| | || | ||| | Sbjct 3613 AACAGATCTCGACATCGCATCTCTTCTTTACCTGTATTTTTTTTCAACTCTATGAATTCT 3672 Query 63366 ATAATATCAGAATGCCACGGTTCCAAGT-ATATGGCCATAACTCCAGGCCGTTTGTTTCC 63424 | ||| ||| |||||| |||||||| | | ||| ||| | ||||| ||||| | || Sbjct 3673 AGAATGTCAACATGCCATGGTTCCAAATAAAATGCGCAT-GCACCAGGGCGTTTTTGACC 3731 Query 63425 TCCCTGATCTATGTATCT-AGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63481 |||||||| ||| |||| ||| || | | | ||| | |||| | ||| | ||| || Sbjct 3732 ACCCTGATCGATGCATCTGAGC-GTACTCTCAAAAATTTTCAAAACTGGTACAATTCC 3788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629804980029840