Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoloma_20neurophilia_20[genbank_20GCA_5F001432165.1_202015-11- 05] 1,603 sequences; 5,248,409 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq495 214 2e-50 seq1321 82.4 7e-11 >seq495 Length=2372 Score = 214 bits (236), Expect = 2e-50 Identities = 581/882 (66%), Gaps = 12/882 (1%) Strand=Plus/Plus Query 11339 TTTTGATATTCACTAACTCGTCGTTCGAAAAAATTAGTCTTACCTTCTAGTGATATATAC 11398 |||||||||||| || ||| || ||||| || || ||||||| || ||| |||| Sbjct 278 TTTTGATATTCAGATACACGTTTCTCAAAAAAGTTGGTTTTACCTTGTAATGAAATATTT 337 Query 11399 TCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTAACTCTGTTAAT 11458 ||||| || ||| || || | ||| | ||||||| |||| | || ||| ||| Sbjct 338 TCCATGAAATCAAATGGGTTGTTCGTATTATAAACTTTTTTACAATCAAAATCTTGTAAG 397 Query 11459 AATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTATAAGA 11518 | | |||||| |||||||||| ||| | |||| || |||||||||||||||||| Sbjct 398 ATGCCATCTGCTACGAATTCTACATATTTGCACATGGAATTACAATTCATACCTATAAGT 457 Query 11519 TCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATCAATGATTATC 11578 || || | | ||| | | ||||||||| ||||| | || || || || | || Sbjct 458 GAGACAGGCAATGAAACATTAACAAACTCCTTCTCTATTTCTACTGCTTCCATCACAATT 517 Query 11579 GACGTTATAACT---TCCTTAGATGGTGGATGT--AATAAATGTTTAAACATTAAACACG 11633 ||| | ||| || ||| | || | || | ||| | | ||||| | Sbjct 518 T--GTT-TGACTATCTCTTTATTTACCTTATTTTTAAGATATGAGTGTA--TTAAAACGG 572 Query 11634 CAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGG 11693 |||| | ||||||| || || |||| ||| || ||||| |||||||| | || | Sbjct 573 CAAATTTGTAATGTAAGCCCTCATCTCGTGATATGAGCTCATTTGAAAATGTCAGACCAG 632 Query 11694 GCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTC 11753 ||||| |||| ||| |||| ||| || || | ||||| ||| || || || | | Sbjct 633 GCATCTTGCCTCTTTTCTTTAACCAGAAGATGGATGCAAAGGAAGAGGAGAAAAAAAGAC 692 Query 11754 CCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATATACCT-TGTTGCTAGATATCCAT 11812 | || ||| ||||||||||| | ||| ||| ||| | ||| | |||||| Sbjct 693 CTTCTACACATGCAAATGCTATCAATCTGATAGAATAGTCCTCTTTTGAGTCA-ATCCAT 751 Query 11813 TTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAATAAA 11872 || ||||| ||| || || | | || || ||| || |||||||| | | Sbjct 752 TTGAAACACCAATTAGCCTTTTTCTCAATTGATGGAATATTTTTGATTGCGTTAAACAGA 811 Query 11873 TGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAA 11932 ||||| | |||||| | | ||| || || ||||| ||| ||||| || ||| Sbjct 812 AAGTGTTTTTGTTCGTTATCTTTAATATAAGTGTCAATTAACAAAGAGTACATCTCAGAA 871 Query 11933 TGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACA 11992 || || ||||| || || || ||||| || |||||| ||| ||| | ||| | Sbjct 872 TGGATGTTTTCTATCATAATCTGGAATCCGTAAAAACATTTTGCTTCTTTAAGCTGAATT 931 Query 11993 TCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATGCAAAAAAT 12052 || |||||||||| |||||| |||||||| || || ||||| | || |||||| Sbjct 932 TCTCTTGAAAATCTTTCTAATAAATTTTCATTTACGATTCCGTCACTTGCAGCGAAAAAT 991 Query 12053 GCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTATCCCAATCATCTAAA 12112 || || | || | ||| || |||| || || |||| || |||||| ||| Sbjct 992 GCAAGAACATTTGATATGAAATATTGCTCACTTTCTTTTAAAGAATTAAAATCATTCAAA 1051 Query 12113 TCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATTGTTTATACATT 12172 || ||| | ||| ||||||||||| ||||| ||| | || | || ||||||||| Sbjct 1052 TCACGTGAAAGATCAACTTCTTCAACTGTCCAGAAAGAGGAAACCGCATGCTTATACATT 1111 Query 12173 TTCCAGATATCATGATACTTAATAGGGAAAATAACGAACCTA 12214 | ||| |||||||| | | || || |||| | |||| || Sbjct 1112 TGCCAAATATCATGGTGTTCTATTGGAAAAAGAGTGAACTTA 1153 >seq1321 Length=4813 Score = 82.4 bits (90), Expect = 7e-11 Identities = 132/190 (69%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 37993 AGAGACCATTCTTCATCTTTTTCTACGCGTTCCATAAATAAATCAGGTACCCATAATGCA 38052 || ||||| | | |||||| || || ||||||||||| |||||||| | ||||||||| Sbjct 3550 AGTGACCACTGTCCATCTTCTTTGACACGTTCCATAAACAAATCAGGAATCCATAATGCT 3609 Query 38053 GTAAATAAATCTTTGGTTCTATATTCTTCGTTCCCTACATTCTTTCTTAAGCTTAGAAAA 38112 ||||| | |||| || ||||| || ||| ||| ||| | || || || Sbjct 3610 GTAAACAGATCTCGACATCGCATCTCTTCTTTACCTGTATTTTTTTTCAACTCTATGAAT 3669 Query 38113 TCGAATATATCAGCGTGCCATGGTTCTATATAAATCGACATTGCTCCTGGTCTTTTATCA 38172 || | || ||| | ||||||||||| | ||||| | ||| || || | ||| | | Sbjct 3670 TCTAGAATGTCAACATGCCATGGTTCCAAATAAAATGCGCATGCACCAGGGCGTTTTTGA 3729 Query 38173 CCTCCCTGAT 38182 || ||||||| Sbjct 3730 CCACCCTGAT 3739 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468515411934320