Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoloma_20neurophilia_20[genbank_20GCA_5F001432165.1_202015-11- 05] 1,603 sequences; 5,248,409 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq495 264 1e-65 seq1321 102 1e-16 >seq495 Length=2372 Score = 264 bits (292), Expect = 1e-65 Identities = 586/871 (67%), Gaps = 10/871 (1%) Strand=Plus/Plus Query 35866 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATT 35925 |||||| |||||| |||||||| || ||||| || |||||||||| |||||| ||||| Sbjct 277 TTTTTGATATTCAGATACACGTTTCTCAAAAAAGTTGGTTTTACCTTGTAATGAAATATT 336 Query 35926 TTCCATGAAATCGAATGGATTGATAACATTATAAAtttttttA-AATCCCAATTCAGAAA 35984 |||||||||||| ||||| ||| | |||||||| ||||||| |||| ||| | || Sbjct 337 TTCCATGAAATCAAATGGGTTGTTCGTATTATAAACTTTTTTACAATCAAAATCTTGTAA 396 Query 35985 TCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAA 36044 | | |||||| || ||||||| |||| | ||| | ||||||||| ||||||| Sbjct 397 G-ATGCCATCTGCTACGAATTCTACATATTTGCACATGGAATTACAATTCATACCTATAA 455 Query 36045 GTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAA 36104 || || || | | ||| ||| ||| || | || || || || || | | || Sbjct 456 GTGAGACAGGCAATGAAACATTAACAAACTCCTTCTCTATTTCTACTGCTTCCATCACAA 515 Query 36105 TAGATATTACTGTTTCTTCACT--CGGTGGATACAATAAATGTTTAAACATCAAACATGC 36162 | | | ||| | |||| | | | | | || | ||| | | | |||| || Sbjct 516 TTTGTTTGACTATCTCTTTATTTACCTTATTTTTAAGATATGAGTGTAT-TAAAACG-GC 573 Query 36163 GAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGG 36222 || | | | |||| ||||| |||| || | || || ||||| || || || || Sbjct 574 AAATTTGTAATGTAAGCCCTCATCTCGTGATATGAGCTCATTTGAAAATGTCAGACCAGG 633 Query 36223 CATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCC 36282 ||| ||| | || || | ||| || ||||| ||||| || || || |||| || Sbjct 634 CATCTTGCCTCTTTTCTTTAACCAGAAGATGGATGCAAAGGAAGAGGAGAAAAAAAGACC 693 Query 36283 TTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGT--ATCCAC 36340 |||||| ||||| || || | ||| ||| | | || | || ||||| Sbjct 694 TTCTACACATGCAAATGCTATCAATCTGATAGAATAGTC--CTCTTTTGAGTCAATCCAT 751 Query 36341 TTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGA 36400 || | ||||| ||||| || | | | || || | | || || ||||| ||| Sbjct 752 TTGAAACACCAATTAGCCTTTTTCTCAATTGATGGAATATTTTTGATTGCGTTAAACAGA 811 Query 36401 TAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAA 36460 ||| ||||| | ||||||||| ||| || ||||| || | | ||||| || ||| Sbjct 812 AAGTGTTTTTGTTCGTTATCTTTAATATAAGTGTCAATTAACAAAGAGTACATCTCAGAA 871 Query 36461 TGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACT 36520 || |||||||| || || || |||||||| |||||| | || || ||| ||| | | Sbjct 872 TGGATGTTTTCTATCATAATCTGGAATCCGTAAAAACATTTTGCTTCTTTAAGCTGAATT 931 Query 36521 TCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAAC 36580 ||| | |||||| |||| |||||||||||| || ||||||||||| || || ||||| Sbjct 932 TCTCTTGAAAATCTTTCTAATAAATTTTCATTTACGATTCCGTCACTTGCAGCGAAAAAT 991 Query 36581 GCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTATTCCAATCATTGATA 36640 || | |||| | ||| ||||||| || || | ||| ||| ||||||| | | Sbjct 992 GCAAGAACATTTGATATGAAATATTGCTCACTTTCTTTTAAAGAATTAAAATCATTCAAA 1051 Query 36641 TCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATA 36700 || || | ||| |||||||| |||||||| || || | | || | |||||||| Sbjct 1052 TCACGTGAAAGATCAACTTCTTCAACTGTCCAGAAAGAGGAAACCGCATGCTTATACATT 1111 Query 36701 TTCCAGATGTCATGATATTGAATTGGAAAAA 36731 | ||| || ||||| | || |||||||||| Sbjct 1112 TGCCAAATATCATGGTGTTCTATTGGAAAAA 1142 >seq1321 Length=4813 Score = 102 bits (112), Expect = 1e-16 Identities = 169/239 (71%), Gaps = 4/239 (2%) Strand=Plus/Plus Query 66039 GACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA 66098 ||||||| ||| || || || || |||| |||||| | |||||||||||| | ||| || Sbjct 3553 GACCACTGTCCATCTTCTTTGACACGTTCCATAAACAAATCAGGAATCCATAATGCTGTA 3612 Query 66099 AATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCC 66158 || | ||||| || || || || |||||||| ||||| | || | ||| | Sbjct 3613 AACAGATCTCGACATCGCATCTCTTCTTTACCTGTATTTTTTTTCAACTCTATGAATTCT 3672 Query 66159 ATAATATCATAATGCCACGGTTCCAAGT-ATATGGCCATAACTCCAGGCCGTTTGTTTCC 66217 | ||| ||| |||||| |||||||| | | ||| ||| | ||||| ||||| | || Sbjct 3673 AGAATGTCAACATGCCATGGTTCCAAATAAAATGCGCAT-GCACCAGGGCGTTTTTGACC 3731 Query 66218 TCCCTGATCTATGTATCT-AGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 66275 |||||||| ||| |||| ||| || | | | ||| | |||| | ||| | ||| ||| Sbjct 3732 ACCCTGATCGATGCATCTGAGC-GTACTCTCAAAAATTTTCAAAACTGGTACAATTCCA 3789 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658159611862520