Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoloma_20neurophilia_20[genbank_20GCA_5F001432165.1_202015-11- 05] 1,603 sequences; 5,248,409 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq495 228 1e-54 seq1321 111 2e-19 >seq495 Length=2372 Score = 228 bits (252), Expect = 1e-54 Identities = 583/876 (67%), Gaps = 20/876 (2%) Strand=Plus/Plus Query 49668 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATT 49727 |||||| |||||| |||||||| || ||||| || ||||| |||| ||||| ||||| Sbjct 277 TTTTTGATATTCAGATACACGTTTCTCAAAAAAGTTGGTTTTACCTTGTAATGAAATATT 336 Query 49728 TTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttA-AATCCCAATTCAGAAA 49786 ||||||||||||||| || ||| | |||||||| ||||||| |||| ||| | || Sbjct 337 TTCCATGAAATCAAATGGGTTGTTCGTATTATAAACTTTTTTACAATCAAAATCTTGTAA 396 Query 49787 TCAATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAA 49846 | | ||| || || ||||||| |||| | ||| | ||||||||| ||||||| Sbjct 397 G-ATGCCATCTGCTACGAATTCTACATATTTGCACATGGAATTACAATTCATACCTATAA 455 Query 49847 GTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAA 49906 || || || | | || ||| ||| || | || || ||| || || | | || Sbjct 456 GTGAGACAGGCAATGAAACATTAACAAACTCCTTCTCTATTTCTACTGCTTCCATCACAA 515 Query 49907 TAGATCTAACGGTTTCTTCACT--CGGTGGATGCAATAAATGTTTAAACATCAAACATGC 49964 | | | || | |||| | | | | | || | ||| | | | |||| || Sbjct 516 TTTGTTTGACTATCTCTTTATTTACCTTATTTTTAAGATATGAGTGTAT-TAAAACG-GC 573 Query 49965 GAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGG 50024 || | | | || | ||||| |||| || || || || ||||| || || || || Sbjct 574 AAATTTGTAATGTAAGCCCTCATCTCGTGATATGAGCTCATTTGAAAATGTCAGACCAGG 633 Query 50025 CATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCC--AGAAAAGAAGATT 50082 ||| ||| | || || | ||| || ||||| ||||| || |||||| |||| Sbjct 634 CATCTTGCCTCTTTTCTTTAACCAGAAGATGGATGCAAAGGAAGAGGAGAAAAAAAGA-- 691 Query 50083 CCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATA-ACTGGCGCTGTCATGTATCCA 50141 |||||||| ||||| || | | ||| ||| | | | || | || || | Sbjct 692 CCTTCTACACATGCAAATGCTATCAATCTG-----ATAGAATAGTCCTCTTTTGAGTCAA 746 Query 50142 --CTTTTGAGCC--CAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAA 50197 | ||||| | |||| ||||| || | | | || || ||| || || |||| Sbjct 747 TCCATTTGAAACACCAATTAGCCTTTTTCTCAATTGATGGAATATTTTTGATTGCGTTAA 806 Query 50198 AGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTT 50257 | ||| ||| ||||| | ||||||||| |||||| || || || | | ||||| | Sbjct 807 ACAGAAAGTGTTTTTGTTCGTTATCTTTAATATAAGTGTCAATTAACAAAGAGTACATCT 866 Query 50258 CCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCT 50317 | ||||| |||||||| || ||||| |||||||| |||||| | || || ||| || Sbjct 867 CAGAATGGATGTTTTCTATCATAATCTGGAATCCGTAAAAACATTTTGCTTCTTTAAGCT 926 Query 50318 GCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAA 50377 | | |||| | |||||| ||| |||||||||||| || ||||||||||| || || | Sbjct 927 GAATTTCTCTTGAAAATCTTTCTAATAAATTTTCATTTACGATTCCGTCACTTGCAGCGA 986 Query 50378 AAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAATCAT 50437 |||| || | |||| | ||| |||| || || | | ||| ||| |||||| Sbjct 987 AAAATGCAAGAACATTTGATATGAAATATTGCTCACTTTCTTTTAAAGAATTAAAATCAT 1046 Query 50438 TGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTAT 50497 | | ||| || | ||| |||||||| |||||||| || || | | || | |||| Sbjct 1047 TCAAATCACGTGAAAGATCAACTTCTTCAACTGTCCAGAAAGAGGAAACCGCATGCTTAT 1106 Query 50498 ACATATTCCAGATGTCATGATATTGGATTGGGAAAA 50533 |||| | ||| || ||||| | || ||||| |||| Sbjct 1107 ACATTTGCCAAATATCATGGTGTTCTATTGGAAAAA 1142 >seq1321 Length=4813 Score = 111 bits (122), Expect = 2e-19 Identities = 171/239 (72%), Gaps = 4/239 (2%) Strand=Plus/Plus Query 79918 GACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA 79977 ||||||| |||||| || || || |||| |||||| | |||||||||||| | ||| || Sbjct 3553 GACCACTGTCCATCTTCTTTGACACGTTCCATAAACAAATCAGGAATCCATAATGCTGTA 3612 Query 79978 AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCC 80037 || ||||||| || ||| || || |||||||| ||||| | || | ||| | Sbjct 3613 AACAGATCTCGACATCGCATCTCTTCTTTACCTGTATTTTTTTTCAACTCTATGAATTCT 3672 Query 80038 ATAATATCAGAATGCCACGGTTCCAAGT-ATATGGCCATAACTCCCGGTCGTTTGTTTCC 80096 | ||| ||| |||||| |||||||| | | ||| ||| | || || ||||| | || Sbjct 3673 AGAATGTCAACATGCCATGGTTCCAAATAAAATGCGCAT-GCACCAGGGCGTTTTTGACC 3731 Query 80097 TCCCTGATCTATGTATCT-AGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 80154 |||||||| ||| |||| ||| || | | | ||| | |||| | ||| | ||| ||| Sbjct 3732 ACCCTGATCGATGCATCTGAGC-GTACTCTCAAAAATTTTCAAAACTGGTACAATTCCA 3789 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718254407688920