Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoloma_20neurophilia_20[genbank_20GCA_5F001432165.1_202015-11- 05] 1,603 sequences; 5,248,409 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq495 187 2e-42 >seq495 Length=2372 Score = 187 bits (206), Expect = 2e-42 Identities = 571/873 (65%), Gaps = 11/873 (1%) Strand=Plus/Plus Query 13580 TTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATT 13639 ||||||||||||| || | ||| ||||| ||||| |||||||||| | ||| ||||| Sbjct 277 TTTTTGATATTCAGATACACGTTTCTCAAAAAAGTTGGTTTTACCTTGTAATGAAATATT 336 Query 13640 TTCCATAAAATCAAATGGATTTATTGACATAAACACTTTATCACAACCTAGTTCTAATAG 13699 |||||| ||||||||||| || | | || | ||||| | |||| | | ||| || Sbjct 337 TTCCATGAAATCAAATGGGTTGTTCGTATTATAAACTTTTTTACAATCAAAATCTTGTAA 396 Query 13700 TAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAG 13759 | | ||| || | || || | ||||| |||| ||| ||||||||||||||| || Sbjct 397 GATGCCATCTGCTACGAATTCTACATATTTGCACATGGAATTACAATTCATACCTATAAG 456 Query 13760 TTTTACAGG-AATTATATTGGTTAA-AAATTCTTTTTCTATAGACACAGCCTCTTTTATA 13817 | ||||| ||| | | |||| ||| || || ||||| || || || | | | Sbjct 457 TGAGACAGGCAATGAAA--CATTAACAAACTCCTTCTCTATTTCTACTGCTTCCATCACA 514 Query 13818 ATAATTGTAATAATCTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCA 13877 || | | | ||||| ||| || ||| |||| | |||||| ||| Sbjct 515 ATTTGTTTGACTATCTCTTTATTTACCTTATTTTTAAGATATGAGTGTATTAAAACGGCA 574 Query 13878 AAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGC 13937 || | |||| | ||||||||||| || || || ||||||||||| | || ||| Sbjct 575 AATTTGTAATGTAAGCCCTCATCTCGTGATATGAGCTCATTTGAAAATGTCAGACCAGGC 634 Query 13938 ATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCC 13997 ||| |||| ||| |||||||| || || | ||||| || ||| || || | || Sbjct 635 ATCTTGCCTCTTTTCTTTAACCAGAAGATGGATGCAAAGGAAGAGGAGAAAAAAAGACCT 694 Query 13998 TCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCAT 14057 || || ||||| ||||| |||| | | || | | || ||||| | |||||| Sbjct 695 TCTACACATGCAAATGCTATCAATC-TGATAGAATAG-TCCTCTTTTGAGTCA-ATCCAT 751 Query 14058 TTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAA 14117 || | ||| | || ||||| | ||| | || ||| || || ||||| | | Sbjct 752 TTGAAACACCAATTAGCCTTTTTCTCAATTGATGGAATATTTTTGATTGCGTTAAACAGA 811 Query 14118 TATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAG 14177 | | || | || || | ||| || || ||||| | || ||||| ||||| Sbjct 812 AAGTGTTTTTGTTCGTTATCTTTAATATAAGTGTCAATTAACAAAGAGTACATCTCAGAA 871 Query 14178 TGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTACT 14237 || |||||||| || ||||| || || ||||| ||| | ||||| || | | Sbjct 872 TGGATGTTTTCTATCATAATCTGGAATCCGTAAAAACATTTTGCTTCTTTAAGCTGAATT 931 Query 14238 TCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAAT 14297 || |||||||||| ||||||||||| || || || ||||| || || |||||| Sbjct 932 TCTCTTGAAAATCTTTCTAATAAATTTTCATTTACGATTCCGTCACTTGCAGCGAAAAAT 991 Query 14298 GCCAATATGTTTTTAATAAAGTATTGCT--CTTCATTGTTGAGTTTTTTCCAATCGGATA 14355 || | | ||| || || ||||||| ||| || | || || |||| | Sbjct 992 GCAAGAACATTTGATATGAAATATTGCTCACTTTCTTTTAAAG--AATTAAAATCATTCA 1049 Query 14356 AATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACA 14415 |||| |||||||| ||||| ||||||||||| ||| | || || | ||||||| Sbjct 1050 AATCACGTGAAAGATCAACTTCTTCAACTGTCCAGAAAGAGGAAACCGCATGCTTATACA 1109 Query 14416 TTACCCATATTTCTTTATATAATATAGGAAAAA 14448 || ||| || || | | | ||| ||||||| Sbjct 1110 TTTGCCAAATATCATGGTGTTCTATTGGAAAAA 1142 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479718387450200