Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoloma_20neurophilia_20[genbank_20GCA_5F001432165.1_202015-11- 05] 1,603 sequences; 5,248,409 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq495 196 5e-45 >seq495 Length=2372 Score = 196 bits (216), Expect = 5e-45 Identities = 573/874 (66%), Gaps = 13/874 (1%) Strand=Plus/Plus Query 13368 TTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATT 13427 ||||||||||||| || | ||| ||||||||||| |||||||||| | ||| ||||| Sbjct 277 TTTTTGATATTCAGATACACGTTTCTCAAAAAAGTTGGTTTTACCTTGTAATGAAATATT 336 Query 13428 TTCCATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAA 13487 |||||| ||||| ||||| || | | || | ||||| | |||| | | ||| ||| Sbjct 337 TTCCATGAAATCAAATGGGTTGTTCGTATTATAAACTTTTTTACAATCAAAATCTTGTAA 396 Query 13488 TAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAG 13547 | | ||| || | || || | ||||| |||| ||| ||||||||||||||| || Sbjct 397 GATGCCATCTGCTACGAATTCTACATATTTGCACATGGAATTACAATTCATACCTATAAG 456 Query 13548 TTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAAT 13607 | ||||| | | | | | | ||| || || ||||| || || || | | ||| Sbjct 457 TGAGACAGGCAATGAAACATTAACAAACTCCTTCTCTATTTCTACTGCTTCCATCACAAT 516 Query 13608 AATCTTAATAATGTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAA 13667 || | || || ||| || ||| |||| | |||||| ||||| Sbjct 517 TTGTTTGACTATCTCTTTATTTACCTTATTTTTAAGATATGAGTGTATTAAAACGGCAAA 576 Query 13668 ATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCAT 13727 | |||| | ||||||||||| || || || ||||||||||| | || ||||| Sbjct 577 TTTGTAATGTAAGCCCTCATCTCGTGATATGAGCTCATTTGAAAATGTCAGACCAGGCAT 636 Query 13728 CAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTC 13787 | |||| ||| |||||||| || || | || || || ||| || || | || || Sbjct 637 CTTGCCTCTTTTCTTTAACCAGAAGATGGATGCAAAGGAAGAGGAGAAAAAAAGACCTTC 696 Query 13788 AACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTT 13847 || ||||| ||||| | || | | || | | || ||||| | | |||||||| Sbjct 697 TACACATGCAAATGCTATCAATC-TGATAGAATAG-TCCTCTTTTGAGTCA-ATCCATTT 753 Query 13848 TCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAA---TAA 13904 | ||| | || ||||| | ||| | || ||| |||||| || || || Sbjct 754 GAAACACCAATTAGCCTTTTTCTCAATTGATGGAATATTTTTGATTGCGTTAAACAGAAA 813 Query 13905 ATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGA 13964 |||| | || ||| ||| ||| || || ||||| | || ||||| ||||| Sbjct 814 GTGTTTTTGTTCGTTA--TCTT-TAATATAAGTGTCAATTAACAAAGAGTACATCTCAGA 870 Query 13965 GTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTAC 14024 || ||||||||||| ||||| || || ||||||||| | |||||| || | Sbjct 871 ATGGATGTTTTCTATCATAATCTGGAATCCGTAAAAACATTTTGCTTCTTTAAGCTGAAT 930 Query 14025 CTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAA 14084 || ||||||||||| || |||||||| || || || ||||| || || ||||| Sbjct 931 TTCTCTTGAAAATCTTTCTAATAAATTTTCATTTACGATTCCGTCACTTGCAGCGAAAAA 990 Query 14085 TGCCAATATGTTTTTAATAAAGTATTGCT--CTTCATTGTTGAGTTTTTTCCAATCGGCT 14142 ||| | | ||| || || ||||||| ||| || | || || |||| Sbjct 991 TGCAAGAACATTTGATATGAAATATTGCTCACTTTCTTTTAAAG--AATTAAAATCATTC 1048 Query 14143 AAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATAC 14202 ||||| |||||||| ||||| ||||||||||| ||| | || || | |||||| Sbjct 1049 AAATCACGTGAAAGATCAACTTCTTCAACTGTCCAGAAAGAGGAAACCGCATGCTTATAC 1108 Query 14203 ATTACCCATATTTCTTTATATAATATAGGaaaaa 14236 ||| ||| || || | | | ||| ||||||| Sbjct 1109 ATTTGCCAAATATCATGGTGTTCTATTGGAAAAA 1142 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478579210276920