Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudoloma_20neurophilia_20[genbank_20GCA_5F001432165.1_202015-11-
05] 1,603 sequences; 5,248,409 total letters
Query= NC_004003.1
Length=149599
Score E
Sequences producing significant alignments: (Bits) Value
seq495 196 5e-45
>seq495
Length=2372
Score = 196 bits (216), Expect = 5e-45
Identities = 573/874 (66%), Gaps = 13/874 (1%)
Strand=Plus/Plus
Query 13368 TTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATT 13427
||||||||||||| || | ||| ||||||||||| |||||||||| | ||| |||||
Sbjct 277 TTTTTGATATTCAGATACACGTTTCTCAAAAAAGTTGGTTTTACCTTGTAATGAAATATT 336
Query 13428 TTCCATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAA 13487
|||||| ||||| ||||| || | | || | ||||| | |||| | | ||| |||
Sbjct 337 TTCCATGAAATCAAATGGGTTGTTCGTATTATAAACTTTTTTACAATCAAAATCTTGTAA 396
Query 13488 TAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAG 13547
| | ||| || | || || | ||||| |||| ||| ||||||||||||||| ||
Sbjct 397 GATGCCATCTGCTACGAATTCTACATATTTGCACATGGAATTACAATTCATACCTATAAG 456
Query 13548 TTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAAT 13607
| ||||| | | | | | | ||| || || ||||| || || || | | |||
Sbjct 457 TGAGACAGGCAATGAAACATTAACAAACTCCTTCTCTATTTCTACTGCTTCCATCACAAT 516
Query 13608 AATCTTAATAATGTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAA 13667
|| | || || ||| || ||| |||| | |||||| |||||
Sbjct 517 TTGTTTGACTATCTCTTTATTTACCTTATTTTTAAGATATGAGTGTATTAAAACGGCAAA 576
Query 13668 ATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCAT 13727
| |||| | ||||||||||| || || || ||||||||||| | || |||||
Sbjct 577 TTTGTAATGTAAGCCCTCATCTCGTGATATGAGCTCATTTGAAAATGTCAGACCAGGCAT 636
Query 13728 CAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTC 13787
| |||| ||| |||||||| || || | || || || ||| || || | || ||
Sbjct 637 CTTGCCTCTTTTCTTTAACCAGAAGATGGATGCAAAGGAAGAGGAGAAAAAAAGACCTTC 696
Query 13788 AACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTT 13847
|| ||||| ||||| | || | | || | | || ||||| | | ||||||||
Sbjct 697 TACACATGCAAATGCTATCAATC-TGATAGAATAG-TCCTCTTTTGAGTCA-ATCCATTT 753
Query 13848 TCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAA---TAA 13904
| ||| | || ||||| | ||| | || ||| |||||| || || ||
Sbjct 754 GAAACACCAATTAGCCTTTTTCTCAATTGATGGAATATTTTTGATTGCGTTAAACAGAAA 813
Query 13905 ATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGA 13964
|||| | || ||| ||| ||| || || ||||| | || ||||| |||||
Sbjct 814 GTGTTTTTGTTCGTTA--TCTT-TAATATAAGTGTCAATTAACAAAGAGTACATCTCAGA 870
Query 13965 GTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTAC 14024
|| ||||||||||| ||||| || || ||||||||| | |||||| || |
Sbjct 871 ATGGATGTTTTCTATCATAATCTGGAATCCGTAAAAACATTTTGCTTCTTTAAGCTGAAT 930
Query 14025 CTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAA 14084
|| ||||||||||| || |||||||| || || || ||||| || || |||||
Sbjct 931 TTCTCTTGAAAATCTTTCTAATAAATTTTCATTTACGATTCCGTCACTTGCAGCGAAAAA 990
Query 14085 TGCCAATATGTTTTTAATAAAGTATTGCT--CTTCATTGTTGAGTTTTTTCCAATCGGCT 14142
||| | | ||| || || ||||||| ||| || | || || ||||
Sbjct 991 TGCAAGAACATTTGATATGAAATATTGCTCACTTTCTTTTAAAG--AATTAAAATCATTC 1048
Query 14143 AAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATAC 14202
||||| |||||||| ||||| ||||||||||| ||| | || || | ||||||
Sbjct 1049 AAATCACGTGAAAGATCAACTTCTTCAACTGTCCAGAAAGAGGAAACCGCATGCTTATAC 1108
Query 14203 ATTACCCATATTTCTTTATATAATATAGGaaaaa 14236
||| ||| || || | | | ||| |||||||
Sbjct 1109 ATTTGCCAAATATCATGGTGTTCTATTGGAAAAA 1142
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 478579210276920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |