Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoloma_20neurophilia_20[genbank_20GCA_5F001432165.1_202015-11- 05] 1,603 sequences; 5,248,409 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq495 230 3e-55 seq1321 114 2e-20 >seq495 Length=2372 Score = 230 bits (254), Expect = 3e-55 Identities = 581/873 (67%), Gaps = 14/873 (2%) Strand=Plus/Plus Query 41773 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATT 41832 |||||| |||||| |||||||| || ||||| || || || |||| ||||| ||||| Sbjct 277 TTTTTGATATTCAGATACACGTTTCTCAAAAAAGTTGGTTTTACCTTGTAATGAAATATT 336 Query 41833 TTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttA-AATCCCAATTCAGAAA 41891 ||||||||||||||| || ||| | |||||||| ||||||| |||| ||| | || Sbjct 337 TTCCATGAAATCAAATGGGTTGTTCGTATTATAAACTTTTTTACAATCAAAATCTTGTAA 396 Query 41892 TCAATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAA 41951 | | |||||| | |||||||| |||| | ||| | ||||||||| ||||||| Sbjct 397 G-ATGCCATCTGCTACGAATTCTACATATTTGCACATGGAATTACAATTCATACCTATAA 455 Query 41952 GTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAA 42011 || || || | | ||| ||| ||| || | || || || || || | | || Sbjct 456 GTGAGACAGGCAATGAAACATTAACAAACTCCTTCTCTATTTCTACTGCTTCCATCACAA 515 Query 42012 TAGATCTTACTGTTTCTTCACT--CGGTGGATACAATAAATGTTTAAACATCAAACATGC 42069 | | | ||| | |||| | | | | | || | ||| | | | |||| || Sbjct 516 TTTGTTTGACTATCTCTTTATTTACCTTATTTTTAAGATATGAGTGTAT-TAAAACG-GC 573 Query 42070 GAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGG 42129 || | | | || | |||||||||| || | || || ||||| || || || || Sbjct 574 AAATTTGTAATGTAAGCCCTCATCTCGTGATATGAGCTCATTTGAAAATGTCAGACCAGG 633 Query 42130 CATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCC--AGAAAAGAAGATT 42187 ||| ||| | || || | ||| || || || ||||| || |||||| |||| Sbjct 634 CATCTTGCCTCTTTTCTTTAACCAGAAGATGGATGCAAAGGAAGAGGAGAAAAAAAGA-- 691 Query 42188 CCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGT--ATCC 42245 |||||||| ||||| || || | ||| ||| | | || | || |||| Sbjct 692 CCTTCTACACATGCAAATGCTATCAATCTGATAGAATAGTC--CTCTTTTGAGTCAATCC 749 Query 42246 ACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGA 42305 | || | ||||| ||||| || | | | || || ||| || || ||||| | Sbjct 750 ATTTGAAACACCAATTAGCCTTTTTCTCAATTGATGGAATATTTTTGATTGCGTTAAACA 809 Query 42306 GATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTG 42365 || ||| ||||| | ||||||||| ||| || || || || | | ||||| || | Sbjct 810 GAAAGTGTTTTTGTTCGTTATCTTTAATATAAGTGTCAATTAACAAAGAGTACATCTCAG 869 Query 42366 AATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTA 42425 |||| |||||||| || ||||| |||||||| |||||| | || || ||| ||| | Sbjct 870 AATGGATGTTTTCTATCATAATCTGGAATCCGTAAAAACATTTTGCTTCTTTAAGCTGAA 929 Query 42426 CTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAA 42485 |||| | |||||| ||| ||||||||| || || ||||||||||| || || |||| Sbjct 930 TTTCTCTTGAAAATCTTTCTAATAAATTTTCATTTACGATTCCGTCACTTGCAGCGAAAA 989 Query 42486 ACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCCAATCATTGA 42545 | || | |||| | ||| ||||||| || | |||| ||| ||||||| | Sbjct 990 ATGCAAGAACATTTGATATGAAATATTGCTCACTTTCTTTTAAAGAATTAAAATCATTCA 1049 Query 42546 TATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACA 42605 ||| || | ||| |||||||| || ||||| || || | | || | ||||||| Sbjct 1050 AATCACGTGAAAGATCAACTTCTTCAACTGTCCAGAAAGAGGAAACCGCATGCTTATACA 1109 Query 42606 TATTCCAGATATCATGATATTGAATTGGGAAAA 42638 | | ||| |||||||| | || ||||| |||| Sbjct 1110 TTTGCCAAATATCATGGTGTTCTATTGGAAAAA 1142 >seq1321 Length=4813 Score = 114 bits (126), Expect = 2e-20 Identities = 351/535 (66%), Gaps = 12/535 (2%) Strand=Plus/Plus Query 71709 CAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCAAAGATT 71768 || ||| ||||| |||| |||| | | ||||| || |||||| | || ||||| Sbjct 3261 CAAATTGCAAACAGCTATTTCATCTGGTGAAGTATATTCTACAATTTCTGCACAGAGATT 3320 Query 71769 ACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATA 71828 ||| | | ||| || || | || || |||||| | ||||||| | || || || Sbjct 3321 ACTTGATTGGATCGTGCCAAGATGTTTTTGATTGTTACATTTGTTAATTGTGTCTTTGTA 3380 Query 71829 AAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCG 71888 | ||| | || || ||||||||||| ||| || | || |||||| | || | Sbjct 3381 TAACATATATGGCAGCCCTGTTTCAATCTGTGATGAAATGAGCGATTTCCAAATAACCTG 3440 Query 71889 AGCCTTTATTATAT-TCT---TGTATCTCTTTTCTCTTTCGTATTGTGTATATAATCGTT 71944 || | ||| | ||| ||| | ||||||||| ||| | ||| | || Sbjct 3441 TGCTCTGATTGTTCGTCTGGCTGTGCCCTTTTTCTCTTC----TTGGATGTATTTTTCTT 3496 Query 71945 CGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAATGACC 72004 ||| || || || | | | ||| || || ||||| || | | | ||||| Sbjct 3497 TGAATTCTTCGCCATATAAAAGATTTAAGCCTGGCACTTCATCAGGTGAAAAAAGTGACC 3556 Query 72005 ACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATA 72064 ||| |||||| || || || |||| |||||| | |||||||||||| | ||| |||| | Sbjct 3557 ACTGTCCATCTTCTTTGACACGTTCCATAAACAAATCAGGAATCCATAATGCTGTAAACA 3616 Query 72065 GATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAA 72124 |||||| || ||| || || |||||||| ||||| | || | ||| | | || Sbjct 3617 GATCTCGACATCGCATCTCTTCTTTACCTGTATTTTTTTTCAACTCTATGAATTCTAGAA 3676 Query 72125 TATCAGAATGCCACGGTTCCAAGT-ATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCC 72183 | ||| |||||| |||||||| | | ||| ||| | || || ||||| | || ||| Sbjct 3677 TGTCAACATGCCATGGTTCCAAATAAAATGCGCAT-GCACCAGGGCGTTTTTGACCACCC 3735 Query 72184 TGATCTATGTATCT-AGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 72237 ||||| ||| |||| ||| || | | | ||| | |||| | ||| | ||| ||| Sbjct 3736 TGATCGATGCATCTGAGC-GTACTCTCAAAAATTTTCAAAACTGGTACAATTCCA 3789 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671125752048280