Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoloma_20neurophilia_20[genbank_20GCA_5F001432165.1_202015-11- 05] 1,603 sequences; 5,248,409 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq495 98.7 1e-15 >seq495 Length=2372 Score = 98.7 bits (108), Expect = 1e-15 Identities = 372/574 (65%), Gaps = 20/574 (3%) Strand=Plus/Minus Query 125013 CATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTC 125072 ||||| |||||| ||||||| || | || |||| || ||||| || ||||| || Sbjct 1125 CATGATATTTGGCAAATGTATAAGCATGCGGTTTCCTCTTTCTGGACAGTTGAAGAAGTT 1066 Query 125073 GATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTT 125132 ||||| || || || | |||| | || || | |||| ||||| | | || Sbjct 1065 GATCTTTCACGTGATTTGAATGATTTTAATTCT---TTAAAAGAAAGTGAGCAATATTTC 1009 Query 125133 ATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTG 125192 ||||| | || | || || || || | || |||||||| || || ||| | || Sbjct 1008 ATATCAAATGTTCTTGCATTTTTCGCTGCAAGTGACGGAATCGTAAATGAAAATTTATTA 949 Query 125193 ACACGATTCTCTCAAGAG---TTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAA 125249 | |||| || ||||| || | | || ||| | || |||||||||||||| Sbjct 948 GAAAGATTTTC--AAGAGAAATTCAGC-TTAAAGAAGCAAAATGTTTTTACGGATTCCAG 892 Query 125250 ATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGC 125309 || ||||| || ||| | || || || ||||||||| | ||||||| || ||| Sbjct 891 ATTATGATAGAAAACATCCATTCTGAGATGTACTCTTTGTTAATTGACACTTATATTAAA 832 Query 125310 GATCCGCAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAA 125369 ||| ||| |||||| | || |||||||||||| | | | || || || ||| Sbjct 831 GATAACGAACAAAAACACTTTCTGTTTAACGCAATCAAAAATATTCCATCAATTGAGAAA 772 Query 125370 AAGGCTCAATGGGTGATTC-GGTGGATCGA-TGACGACAAGTCTTCGTACGCCGACAGAC 125427 |||||| ||| |||| ||| ||||| || | | | | | | || | |||| Sbjct 771 AAGGCT-AATTGGTGTTTCAAATGGATTGACTCAAAAGAGGAC----TATTCTATCAGAT 717 Query 125428 TGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGT--TTTGCGGCCATCTT 125485 || | ||||| || ||||| || |||| ||||| | | ||||| ||||||| Sbjct 716 TGATAGCATTTGCATGTGTAGAAGG--TCTTTTTTTCTCCTCTTCCTTTGCATCCATCTT 659 Query 125486 TTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCG 125545 ||| | ||||| | || ||||| || ||||| || ||| | ||||| || Sbjct 658 CTGGTTAAAGAAAAGAGGCAAGATGCCTGGTCTGACATTTTCAAATGAGCTCATATCACG 599 Query 125546 AGACGAGGGCCTACACTGTGACTTTGCCATTCTA 125579 ||| |||||| |||| | | |||||| || || Sbjct 598 AGATGAGGGCTTACATTACAAATTTGCCGTTTTA 565 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741044351026280