Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoloma_20neurophilia_20[genbank_20GCA_5F001432165.1_202015-11- 05] 1,603 sequences; 5,248,409 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq41 98.7 8e-16 >seq41 Length=3466 Score = 98.7 bits (108), Expect = 8e-16 Identities = 171/248 (69%), Gaps = 2/248 (1%) Strand=Plus/Minus Query 18803 ttttATTGTTTT--CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAA 18860 |||| || |||| || |||| || ||||| || | || || ||| || ||||||| Sbjct 3213 TTTTCTTTTTTTTACCACCTCTTAATCTTAAAACTAAATGTAAAGTACTTTCTTTTTGAA 3154 Query 18861 TATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCT 18920 |||| ||||| || | |||| | | || || | |||||||| ||| | || | ||| | Sbjct 3153 TATTATAATCTGCTAATGTTCTTCCATCTTCTAATTGTTTACCTGCAAATATTAATCTTT 3094 Query 18921 GCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTAT 18980 | ||||| || | || ||||| || |||||| |||||| | | | | || Sbjct 3093 GTTGATCAGGTGGAATACCTTCTTTATCTTGAATTTTTGCTTTTACATTTTCAATTGAAT 3034 Query 18981 CGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCA 19040 | || || ||| | || || |||||||||||||| ||||| ||||||||||||| Sbjct 3033 CAGATGGTTCAACTTCCAATGTTATAGTTTTACCTGTTAATGTTTTAACAAAAATTTGCA 2974 Query 19041 TTTTAAAT 19048 | || ||| Sbjct 2973 TCTTTAAT 2966 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414564700672582