Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoloma_20neurophilia_20[genbank_20GCA_5F001432165.1_202015-11- 05] 1,603 sequences; 5,248,409 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq495 248 7e-61 >seq495 Length=2372 Score = 248 bits (274), Expect = 7e-61 Identities = 574/856 (67%), Gaps = 17/856 (2%) Strand=Plus/Plus Query 12859 TTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATT 12918 |||||||||||| || | ||| ||||||||||| ||||| |||| ||| |||||||| Sbjct 277 TTTTTGATATTCAGATACACGTTTCTCAAAAAAGTTGGTTTTACCTTGTAATGAAATATT 336 Query 12919 TTCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTACACCCTAATTCTAGTAA 12978 |||||| ||||| || || || |||| | ||| ||||||||| | || ||| |||| Sbjct 337 TTCCATGAAATCAAATGGGTTGTTCGTATTATAAACTTTTTTACAATCAAAATCTTGTAA 396 Query 12979 CAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAA 13038 | | || || || || |||| || | ||| ||| ||| ||||| ||||| | Sbjct 397 GATGCCATCTGCTACGAATTCTACATATTTGCACATGGAATTACAATTCATACCTATAAG 456 Query 13039 TTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTAT 13098 | ||||||| | | | | ||| | || ||||| || |||||||| || || || Sbjct 457 TGAGACAGGCAATGAAACATTAACAAACTCCTTCTCTATTTCTACTGCTTCCATCACAAT 516 Query 13099 GTCTCTTATTACGTTCTCTA-ATGGAGG--ATTTGATAGATGCTTAAACATCATACATGC 13155 | | | | || ||||| || | |||| |||| || | | || Sbjct 517 TTGTTTGACTA---TCTCTTTATTTACCTTATTTTTAAGATATGAGTGTATTAAAACGGC 573 Query 13156 AAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGG 13215 ||| | | || || || ||||||| ||| ||||| ||||||||||| ||||| || Sbjct 574 AAATTTGTAATGTAAGCCCTCATCTCGTGATATGAGCTCATTTGAAAATGTCAGACCAGG 633 Query 13216 CATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCC 13275 ||| |||| ||| || | ||| || || | ||||| ||| || ||||| | || Sbjct 634 CATCTTGCCTCTTTTCTTTAACCAGAAGATGGATGCAAAGGAAGAGGAGAAAAAAAGACC 693 Query 13276 TTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTCTCTATCCA 13335 ||| || |||||| |||||||| || | ||| || || |||| | || ||||| Sbjct 694 TTCTACACATGCAAATGCTATCAATCTGATAGAATA-GTCCTCTTTTGAGTCA--ATCCA 750 Query 13336 CTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAATAA 13395 || ||| || || |||| | || | ||||||| ||||||||||| | Sbjct 751 TTTGAAACACCAATTAGCCTTTTTCTCAATTGATGGAATATTTTTGATTGCGTTAAACAG 810 Query 13396 ATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATTTCTGA 13455 | | | ||||| | | ||| ||||||||| || || || || ||||| || || Sbjct 811 AAAGTGTTTTTGTTCGTTATCTTTAATATAAGTGTCAATTAACAAAGAGTACATCTCAGA 870 Query 13456 ATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGAAC 13515 ||| || ||||| ||| || ||||| || ||||||||| | || ||| | ||||| Sbjct 871 ATGGATGTTTTCTATCATAATCTGGAATCCGTAAAAACATTTTGCTTCTTTAAGCTGAAT 930 Query 13516 TTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaa 13575 ||| ||||||||||| ||| ||||| || || || |||||||| ||||| ||||| Sbjct 931 TTCTCTTGAAAATCTTTCTAATAAATTTTCATTTACGATTCCGTCACTTGCAGCGAAAAA 990 Query 13576 aGCAAG--TATGTGCTTAATAAAttttttttCGTTTTC--TGACAACTTTAACCAATCTG 13631 ||||| || || | || || | || || |||| | | | |||| |||| Sbjct 991 TGCAAGAACATTTGAT--ATGAAATATTGCTCACTTTCTTTTAAAGAATTAA--AATCAT 1046 Query 13632 GAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCTTCTTAT 13691 ||||| ||| | ||| || || ||||| ||||| ||||| | ||| || | ||||| Sbjct 1047 TCAAATCACGTGAAAGATCAACTTCTTCAACTGTCCAGAAAGAGGAAACCGCATGCTTAT 1106 Query 13692 ACATCATCCATATATC 13707 |||| ||| ||||| Sbjct 1107 ACATTTGCCAAATATC 1122 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430973980085406