Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudoloma_20neurophilia_20[genbank_20GCA_5F001432165.1_202015-11-
05] 1,603 sequences; 5,248,409 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq41 192 1e-43
seq495 176 1e-38
>seq41
Length=3466
Score = 192 bits (212), Expect = 1e-43
Identities = 201/263 (76%), Gaps = 1/263 (0%)
Strand=Plus/Minus
Query 104300 TATTATACTGAGTCTTTCCATACTTTATTTATTCCCCCTCTTAGCCTAAGTACTAGATGT 104359
||||||| |||||| | |||| ||| | || ||||||| || | |||| ||||
Sbjct 3231 TATTATAAGTTGTCTTTTTTTTCTTTTTTT-TACCACCTCTTAATCTTAAAACTAAATGT 3173
Query 104360 AATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTT 104419
|| ||| |||||| ||||||||||| || | || ||||| || ||||||| ||||||
Sbjct 3172 AAAGTACTTTCTTTTTGAATATTATAATCTGCTAATGTTCTTCCATCTTCTAATTGTTTA 3113
Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479
|| ||||| |||| || ||||||||||| || || ||||||||||| ||||| ||||||
Sbjct 3112 CCTGCAAATATTAATCTTTGTTGATCAGGTGGAATACCTTCTTTATCTTGAATTTTTGCT 3053
Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539
||||||||||| | | ||| ||||| || || | ||| ||||| ||||| || | |
Sbjct 3052 TTTACATTTTCAATTGAATCAGATGGTTCAACTTCCAATGTTATAGTTTTACCTGTTAAT 2993
Query 104540 GTTTTTACAAATATCTGCATTTT 104562
||||| ||||| || ||||| ||
Sbjct 2992 GTTTTAACAAAAATTTGCATCTT 2970
>seq495
Length=2372
Score = 176 bits (194), Expect = 1e-38
Identities = 241/328 (73%), Gaps = 9/328 (3%)
Strand=Plus/Minus
Query 268712 TTTCCAATACAGCATGGTGATATATGGAGGATGTACAAACAGGCCGTTGCTTCTTTTTGG 268771
||||||||| | || |||||| ||| ||||| || || || ||| | ||||| |||
Sbjct 1140 TTTCCAATAGAACACCATGATATTTGGCAAATGTATAAGCATGCGGTTTCCTCTTTCTGG 1081
Query 268772 ACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATAGATTGGAAAAATTTAAAACCAGAA 268831
|| || |||||||| ||||| || ||| || | |||| || ||||||| | |
Sbjct 1080 ACAGTTGAAGAAGTTGATCTTTCACGTGATTTGAATGATTTTAATTCTTTAAAAGAA--A 1023
Query 268832 GAAAG-AAGATTT-ATATCTTATATTCTTGCGTTTTTTGCAGTTAGTGATGGTATCGTTA 268889
| || || |||| ||||| || ||||||| ||||| || | ||||| || ||||| |
Sbjct 1022 GTGAGCAATATTTCATATCAAATGTTCTTGCATTTTTCGCTGCAAGTGACGGAATCGTAA 963
Query 268890 ACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTA--CAGATTCCTGAAGCCAGATGTTT 268947
| |||||| || |||| ||| | | ||||||| | ||| || ||||| | ||||||
Sbjct 962 ATGAAAATTTATTAGA-AAGATTT-TCAAGAGAAATTCAGCTTAAAGAAGCAAAATGTTT 905
Query 268948 TTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAGTCTATTAATAGA 269007
||||||||||||||| |||||||| || ||||| ||||||||| | | ||||| ||
Sbjct 904 TTACGGATTCCAGATTATGATAGAAAACATCCATTCTGAGATGTACTCTTTGTTAATTGA 845
Query 269008 TACTTATATAGATGATAAC-AACGAAAA 269034
|||||||| | |||||| ||| ||||
Sbjct 844 CACTTATATTAAAGATAACGAACAAAAA 817
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151374752075924
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |