Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoloma_20neurophilia_20[genbank_20GCA_5F001432165.1_202015-11- 05] 1,603 sequences; 5,248,409 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq41 192 1e-43 seq495 176 1e-38 >seq41 Length=3466 Score = 192 bits (212), Expect = 1e-43 Identities = 201/263 (76%), Gaps = 1/263 (0%) Strand=Plus/Minus Query 104300 TATTATACTGAGTCTTTCCATACTTTATTTATTCCCCCTCTTAGCCTAAGTACTAGATGT 104359 ||||||| |||||| | |||| ||| | || ||||||| || | |||| |||| Sbjct 3231 TATTATAAGTTGTCTTTTTTTTCTTTTTTT-TACCACCTCTTAATCTTAAAACTAAATGT 3173 Query 104360 AATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTT 104419 || ||| |||||| ||||||||||| || | || ||||| || ||||||| |||||| Sbjct 3172 AAAGTACTTTCTTTTTGAATATTATAATCTGCTAATGTTCTTCCATCTTCTAATTGTTTA 3113 Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 || ||||| |||| || ||||||||||| || || ||||||||||| ||||| |||||| Sbjct 3112 CCTGCAAATATTAATCTTTGTTGATCAGGTGGAATACCTTCTTTATCTTGAATTTTTGCT 3053 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 ||||||||||| | | ||| ||||| || || | ||| ||||| ||||| || | | Sbjct 3052 TTTACATTTTCAATTGAATCAGATGGTTCAACTTCCAATGTTATAGTTTTACCTGTTAAT 2993 Query 104540 GTTTTTACAAATATCTGCATTTT 104562 ||||| ||||| || ||||| || Sbjct 2992 GTTTTAACAAAAATTTGCATCTT 2970 >seq495 Length=2372 Score = 176 bits (194), Expect = 1e-38 Identities = 241/328 (73%), Gaps = 9/328 (3%) Strand=Plus/Minus Query 268712 TTTCCAATACAGCATGGTGATATATGGAGGATGTACAAACAGGCCGTTGCTTCTTTTTGG 268771 ||||||||| | || |||||| ||| ||||| || || || ||| | ||||| ||| Sbjct 1140 TTTCCAATAGAACACCATGATATTTGGCAAATGTATAAGCATGCGGTTTCCTCTTTCTGG 1081 Query 268772 ACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATAGATTGGAAAAATTTAAAACCAGAA 268831 || || |||||||| ||||| || ||| || | |||| || ||||||| | | Sbjct 1080 ACAGTTGAAGAAGTTGATCTTTCACGTGATTTGAATGATTTTAATTCTTTAAAAGAA--A 1023 Query 268832 GAAAG-AAGATTT-ATATCTTATATTCTTGCGTTTTTTGCAGTTAGTGATGGTATCGTTA 268889 | || || |||| ||||| || ||||||| ||||| || | ||||| || ||||| | Sbjct 1022 GTGAGCAATATTTCATATCAAATGTTCTTGCATTTTTCGCTGCAAGTGACGGAATCGTAA 963 Query 268890 ACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTA--CAGATTCCTGAAGCCAGATGTTT 268947 | |||||| || |||| ||| | | ||||||| | ||| || ||||| | |||||| Sbjct 962 ATGAAAATTTATTAGA-AAGATTT-TCAAGAGAAATTCAGCTTAAAGAAGCAAAATGTTT 905 Query 268948 TTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAGTCTATTAATAGA 269007 ||||||||||||||| |||||||| || ||||| ||||||||| | | ||||| || Sbjct 904 TTACGGATTCCAGATTATGATAGAAAACATCCATTCTGAGATGTACTCTTTGTTAATTGA 845 Query 269008 TACTTATATAGATGATAAC-AACGAAAA 269034 |||||||| | |||||| ||| |||| Sbjct 844 CACTTATATTAAAGATAACGAACAAAAA 817 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151374752075924