Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudoloma_20neurophilia_20[genbank_20GCA_5F001432165.1_202015-11-
05] 1,603 sequences; 5,248,409 total letters
Query= NC_005902.1
Length=186250
Score E
Sequences producing significant alignments: (Bits) Value
seq210 154 2e-32
seq1143 100 3e-16
>seq210
Length=3012
Score = 154 bits (170), Expect = 2e-32
Identities = 360/535 (67%), Gaps = 16/535 (3%)
Strand=Plus/Minus
Query 164413 GGAGTAGGTGGACTAGATCGAGAATTTTCTCTTATTTTCAGACGAGCATTTGCTTCTAGA 164472
||| | ||||| ||| | ||||||||| ||||| |||||||| ||| ||| |
Sbjct 2264 GGAATTGGTGGTCTAAAAAAAGAATTTTCAACAATTTTTAGACGAGCCTTTTTATCTCGT 2205
Query 164473 TCAGTTC-CTATCGAAATAATaaaaaaaTTAGGCTGTAAACATATAAAAGGAATTTTATT 164531
| | || | ||| |||| || |||| | | ||| ||| ||| || | ||
Sbjct 2204 GTATATGACTCT-GAATTAATTAATCGATTAAAAATTGACCATGTAAGAGGTATAATTTT 2146
Query 164532 ACATGGACCTCCTGGTTGCGGTAAAACATTAATGGCTCGATGCATTGCTCAAGCTTTTAA 164591
| ||||||| |||||| |||||||| ||||| || || |||| | || | ||||
Sbjct 2145 ATATGGACCACCTGGTACTGGTAAAACTTTAATTGCAAGACAAATTGGTAAAT-TGTTAA 2087
Query 164592 ATCGC----GACCCGTTAAAATTGTTAATGGTCCTGAATTATTGAACAAATATGTAGGTG 164647
| ||| || || ||| |||| ||||| || ||| | | || |||||||| |||
Sbjct 2086 A-CGCAAAAGAACCA--AAAGTTGTAAATGGACCAGAAATTCTCAATAAATATGTTGGTC 2030
Query 164648 AGTCAGAAGCTAATGTTAGAAAGTTGTTTCAGGAGGCTGAAGAAGAACAAAAGAAAGCAG 164707
| || |||| ||| || | | |||||| | || |||||| ||| || || |||| |
Sbjct 2029 AATCTGAAGAAAATATTCGTGAATTGTTTAAAGATGCTGAATTAGATCAGAAAAAAGGAA 1970
Query 164708 GTTTAGCTAGTAAATTACATGTTATTGTTTTTGATGAGATAGATGCTCTTTGCAAAAAAC 164767
| | | | | | ||| | ||| | |||||||| |||||||| |||| || |||
Sbjct 1969 ATCTTTCAA---ACCTTCATATCATTATATTTGATGAAATAGATGCAATTTGTAAGAAAA 1913
Query 164768 G---TGGTGATAATATTATTCATGATGCAGTGGTTAATCAGTTGCTTTCTAAAATAGATG 164824
| | || ||| | | || ||| | | || ||||| || | || ||||||||||
Sbjct 1912 GAAATAGTTCTAACAATTTTACAGATCAAATTGTAAATCAATTATTGTCAAAAATAGATG 1853
Query 164825 GTGTAGAATCCTTAAATAATATTTTAATTGTAGGTATGACCAACCGACCTGATTTAATTG 164884
|||| | |||||||||||||||||| | || ||||| || || ||||||| | |
Sbjct 1852 GTGTTAATAGTTTAAATAATATTTTAATTATTGGAATGACAAATCGTATTGATTTATTGG 1793
Query 164885 ATGATGCTTTATTACGACCTGGTCGATTAGAATTGAAAATAGAAATAGGATTACC 164939
|||| || | ||| |||| ||| | || ||| | | || ||||| ||| ||||
Sbjct 1792 ATGAAGCACTTTTAAGACCAGGTAGGTTTGAAATTCATATTGAAATTGGACTACC 1738
>seq1143
Length=6170
Score = 100 bits (110), Expect = 3e-16
Identities = 88/110 (80%), Gaps = 0/110 (0%)
Strand=Plus/Minus
Query 7129 TGTAATTGATCTATACCCTGACCTTCATAATTAGTATGACAATTTATATAATTAGCTCCA 7188
|||||||| || ||||| |||||||| |||||| ||||||| || | || || || ||
Sbjct 5569 TGTAATTGGTCAATACCTTGACCTTCGTAATTATCATGACAAGTTTTGTATTTTGCACCG 5510
Query 7189 AAATGTCTCCATTGAAACCCATAAATAGGACCTAAATCACCTTCTTCACG 7238
|||||||||||||||||||||| || || || | ||||||| ||| ||
Sbjct 5509 CAATGTCTCCATTGAAACCCATAGATTGGTCCAAGATCACCTGGTTCTCG 5460
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 595860060214800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |