Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoloma_20neurophilia_20[genbank_20GCA_5F001432165.1_202015-11- 05] 1,603 sequences; 5,248,409 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq210 154 2e-32 seq1143 100 3e-16 >seq210 Length=3012 Score = 154 bits (170), Expect = 2e-32 Identities = 360/535 (67%), Gaps = 16/535 (3%) Strand=Plus/Minus Query 164413 GGAGTAGGTGGACTAGATCGAGAATTTTCTCTTATTTTCAGACGAGCATTTGCTTCTAGA 164472 ||| | ||||| ||| | ||||||||| ||||| |||||||| ||| ||| | Sbjct 2264 GGAATTGGTGGTCTAAAAAAAGAATTTTCAACAATTTTTAGACGAGCCTTTTTATCTCGT 2205 Query 164473 TCAGTTC-CTATCGAAATAATaaaaaaaTTAGGCTGTAAACATATAAAAGGAATTTTATT 164531 | | || | ||| |||| || |||| | | ||| ||| ||| || | || Sbjct 2204 GTATATGACTCT-GAATTAATTAATCGATTAAAAATTGACCATGTAAGAGGTATAATTTT 2146 Query 164532 ACATGGACCTCCTGGTTGCGGTAAAACATTAATGGCTCGATGCATTGCTCAAGCTTTTAA 164591 | ||||||| |||||| |||||||| ||||| || || |||| | || | |||| Sbjct 2145 ATATGGACCACCTGGTACTGGTAAAACTTTAATTGCAAGACAAATTGGTAAAT-TGTTAA 2087 Query 164592 ATCGC----GACCCGTTAAAATTGTTAATGGTCCTGAATTATTGAACAAATATGTAGGTG 164647 | ||| || || ||| |||| ||||| || ||| | | || |||||||| ||| Sbjct 2086 A-CGCAAAAGAACCA--AAAGTTGTAAATGGACCAGAAATTCTCAATAAATATGTTGGTC 2030 Query 164648 AGTCAGAAGCTAATGTTAGAAAGTTGTTTCAGGAGGCTGAAGAAGAACAAAAGAAAGCAG 164707 | || |||| ||| || | | |||||| | || |||||| ||| || || |||| | Sbjct 2029 AATCTGAAGAAAATATTCGTGAATTGTTTAAAGATGCTGAATTAGATCAGAAAAAAGGAA 1970 Query 164708 GTTTAGCTAGTAAATTACATGTTATTGTTTTTGATGAGATAGATGCTCTTTGCAAAAAAC 164767 | | | | | | ||| | ||| | |||||||| |||||||| |||| || ||| Sbjct 1969 ATCTTTCAA---ACCTTCATATCATTATATTTGATGAAATAGATGCAATTTGTAAGAAAA 1913 Query 164768 G---TGGTGATAATATTATTCATGATGCAGTGGTTAATCAGTTGCTTTCTAAAATAGATG 164824 | | || ||| | | || ||| | | || ||||| || | || |||||||||| Sbjct 1912 GAAATAGTTCTAACAATTTTACAGATCAAATTGTAAATCAATTATTGTCAAAAATAGATG 1853 Query 164825 GTGTAGAATCCTTAAATAATATTTTAATTGTAGGTATGACCAACCGACCTGATTTAATTG 164884 |||| | |||||||||||||||||| | || ||||| || || ||||||| | | Sbjct 1852 GTGTTAATAGTTTAAATAATATTTTAATTATTGGAATGACAAATCGTATTGATTTATTGG 1793 Query 164885 ATGATGCTTTATTACGACCTGGTCGATTAGAATTGAAAATAGAAATAGGATTACC 164939 |||| || | ||| |||| ||| | || ||| | | || ||||| ||| |||| Sbjct 1792 ATGAAGCACTTTTAAGACCAGGTAGGTTTGAAATTCATATTGAAATTGGACTACC 1738 >seq1143 Length=6170 Score = 100 bits (110), Expect = 3e-16 Identities = 88/110 (80%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 7129 TGTAATTGATCTATACCCTGACCTTCATAATTAGTATGACAATTTATATAATTAGCTCCA 7188 |||||||| || ||||| |||||||| |||||| ||||||| || | || || || || Sbjct 5569 TGTAATTGGTCAATACCTTGACCTTCGTAATTATCATGACAAGTTTTGTATTTTGCACCG 5510 Query 7189 AAATGTCTCCATTGAAACCCATAAATAGGACCTAAATCACCTTCTTCACG 7238 |||||||||||||||||||||| || || || | ||||||| ||| || Sbjct 5509 CAATGTCTCCATTGAAACCCATAGATTGGTCCAAGATCACCTGGTTCTCG 5460 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595860060214800