Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudoloma_20neurophilia_20[genbank_20GCA_5F001432165.1_202015-11-
05] 1,603 sequences; 5,248,409 total letters
Query= NC_006966.1
Length=166259
Score E
Sequences producing significant alignments: (Bits) Value
seq495 152 5e-32
>seq495
Length=2372
Score = 152 bits (168), Expect = 5e-32
Identities = 558/872 (64%), Gaps = 13/872 (1%)
Strand=Plus/Plus
Query 21184 TTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGA 21243
||||||||| ||| || | ||| || ||||| || || || |||| ||||| |||
Sbjct 277 TTTTTGATATTCAGATACACGTTTCTCAAAAAAGTTGGTTTTACCTTGTAATGAAATATT 336
Query 21244 TTCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGATAA 21303
|||||| ||||||||||| || | | ||| | | ||| |||||| | | ||| |||
Sbjct 337 TTCCATGAAATCAAATGGGTTGTTCGTATTATAAACTTTTTTACAATCAAAATCTTGTAA 396
Query 21304 TAATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCAA 21363
| | ||||||||| ||||||| ||||| ||||| | | |||||||||||| || |
Sbjct 397 GATGCCATCTGCTACGAATTCTACATATTTGCACATGGAATTACAATTCATACCTATAAG 456
Query 21364 TTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAA---CAAT 21420
| ||||| | | | | ||| || ||||| || ||||| | ||||
Sbjct 457 TGAGACAGGCAATGAAACATTAACAAACTCCTTCTCTATTTCTACTGCTTCCATCACAAT 516
Query 21421 TATATTTATTATC-CTAGATGTACTAGGGGGATACAATAATTGTTTAAACATCAAACATG 21479
| || | |||| || || ||| || ||| || || | |||| |
Sbjct 517 TTGTTTGACTATCTCTTTATTTACCTTATTTTTAAGATATGAGTGTAT---TAAAACG-G 572
Query 21480 CAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGG 21539
|||| | |||| || || ||||| | ||| | ||||| |||||||| | ||| |
Sbjct 573 CAAATTTGTAATGTAAGCCCTCATCTCGTGATATGAGCTCATTTGAAAATGTCAGACCAG 632
Query 21540 GCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGC 21599
|||| ||||| || |||||||| || || || ||||| | || || |||| |
Sbjct 633 GCATCTTGCCTCTTTTCTTTAACCAGAAGATGGATGCAAAGGAAGAGGAGAAAAAAAGAC 692
Query 21600 CCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTAT-GTAGATTCTTTATCCAATATC 21658
| || || |||||||| | |||| | | | || || | || | |||| |
Sbjct 693 CTTCTACACATGCAAATGCTATCAATC--TGATAGAATAGTCCTCTTTTGAGTCAAT--C 748
Query 21659 CATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAATAGCTTTTAAA 21718
||||| ||| || ||||||| | ||| | ||| | | || || || ||
Sbjct 749 CATTTGAAACACCAATTAGCCTTTTTCTCAATTGATGGAATATTTTTGATTGCGTTAAAC 808
Query 21719 AGATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACATTTCA 21778
||| | ||||| || ||| | || | ||||| |||
Sbjct 809 AGAAAGTGTTTTTGTTCGTTATCTTTAATATAAGTGTCAATTAACAAAGAGTACATCTCA 868
Query 21779 GAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAACATTGA 21838
||||| || ||||||||| ||||| ||||||||||||||| |||| ||| | |||
Sbjct 869 GAATGGATGTTTTCTATCATAATCTGGAATCCGTAAAAACATTTTGCTTCTTTAAGCTGA 928
Query 21839 ACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTGGCGGCAAAA 21898
| || |||||| || || ||||||||||| ||||| ||||| || || |||
Sbjct 929 ATTTCTCTTGAAAATCTTTCTAATAAATTTTCATTTACGATTCCGTCACTTGCAGCGAAA 988
Query 21899 AATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTTTTTCCAATCTAAT 21958
||||| | | |||| ||| |||||| | || | ||| |||| || ||||
Sbjct 989 AATGCAAGAACATTTGATATGAAATATTGCTCACTTTCTTTTAAAGAATTAAAATCATTC 1048
Query 21959 AAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAAGCTAGCAATAGCCTTTTTATAC 22018
||||| ||| | ||| ||||||||| |||||| || | || || | ||||||
Sbjct 1049 AAATCACGTGAAAGATCAACTTCTTCAACTGTCCAGAAAGAGGAAACCGCATGCTTATAC 1108
Query 22019 ATAATCCAGATATCATTATATATTATTGGAAA 22050
|| ||| ||||||| | | |||||||||
Sbjct 1109 ATTTGCCAAATATCATGGTGTTCTATTGGAAA 1140
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 531890142037720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |