Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoloma_20neurophilia_20[genbank_20GCA_5F001432165.1_202015-11- 05] 1,603 sequences; 5,248,409 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq495 152 5e-32 >seq495 Length=2372 Score = 152 bits (168), Expect = 5e-32 Identities = 558/872 (64%), Gaps = 13/872 (1%) Strand=Plus/Plus Query 21184 TTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGA 21243 ||||||||| ||| || | ||| || ||||| || || || |||| ||||| ||| Sbjct 277 TTTTTGATATTCAGATACACGTTTCTCAAAAAAGTTGGTTTTACCTTGTAATGAAATATT 336 Query 21244 TTCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGATAA 21303 |||||| ||||||||||| || | | ||| | | ||| |||||| | | ||| ||| Sbjct 337 TTCCATGAAATCAAATGGGTTGTTCGTATTATAAACTTTTTTACAATCAAAATCTTGTAA 396 Query 21304 TAATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCAA 21363 | | ||||||||| ||||||| ||||| ||||| | | |||||||||||| || | Sbjct 397 GATGCCATCTGCTACGAATTCTACATATTTGCACATGGAATTACAATTCATACCTATAAG 456 Query 21364 TTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAA---CAAT 21420 | ||||| | | | | ||| || ||||| || ||||| | |||| Sbjct 457 TGAGACAGGCAATGAAACATTAACAAACTCCTTCTCTATTTCTACTGCTTCCATCACAAT 516 Query 21421 TATATTTATTATC-CTAGATGTACTAGGGGGATACAATAATTGTTTAAACATCAAACATG 21479 | || | |||| || || ||| || ||| || || | |||| | Sbjct 517 TTGTTTGACTATCTCTTTATTTACCTTATTTTTAAGATATGAGTGTAT---TAAAACG-G 572 Query 21480 CAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGG 21539 |||| | |||| || || ||||| | ||| | ||||| |||||||| | ||| | Sbjct 573 CAAATTTGTAATGTAAGCCCTCATCTCGTGATATGAGCTCATTTGAAAATGTCAGACCAG 632 Query 21540 GCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGC 21599 |||| ||||| || |||||||| || || || ||||| | || || |||| | Sbjct 633 GCATCTTGCCTCTTTTCTTTAACCAGAAGATGGATGCAAAGGAAGAGGAGAAAAAAAGAC 692 Query 21600 CCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTAT-GTAGATTCTTTATCCAATATC 21658 | || || |||||||| | |||| | | | || || | || | |||| | Sbjct 693 CTTCTACACATGCAAATGCTATCAATC--TGATAGAATAGTCCTCTTTTGAGTCAAT--C 748 Query 21659 CATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAATAGCTTTTAAA 21718 ||||| ||| || ||||||| | ||| | ||| | | || || || || Sbjct 749 CATTTGAAACACCAATTAGCCTTTTTCTCAATTGATGGAATATTTTTGATTGCGTTAAAC 808 Query 21719 AGATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACATTTCA 21778 ||| | ||||| || ||| | || | ||||| ||| Sbjct 809 AGAAAGTGTTTTTGTTCGTTATCTTTAATATAAGTGTCAATTAACAAAGAGTACATCTCA 868 Query 21779 GAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAACATTGA 21838 ||||| || ||||||||| ||||| ||||||||||||||| |||| ||| | ||| Sbjct 869 GAATGGATGTTTTCTATCATAATCTGGAATCCGTAAAAACATTTTGCTTCTTTAAGCTGA 928 Query 21839 ACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTGGCGGCAAAA 21898 | || |||||| || || ||||||||||| ||||| ||||| || || ||| Sbjct 929 ATTTCTCTTGAAAATCTTTCTAATAAATTTTCATTTACGATTCCGTCACTTGCAGCGAAA 988 Query 21899 AATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTTTTTCCAATCTAAT 21958 ||||| | | |||| ||| |||||| | || | ||| |||| || |||| Sbjct 989 AATGCAAGAACATTTGATATGAAATATTGCTCACTTTCTTTTAAAGAATTAAAATCATTC 1048 Query 21959 AAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAAGCTAGCAATAGCCTTTTTATAC 22018 ||||| ||| | ||| ||||||||| |||||| || | || || | |||||| Sbjct 1049 AAATCACGTGAAAGATCAACTTCTTCAACTGTCCAGAAAGAGGAAACCGCATGCTTATAC 1108 Query 22019 ATAATCCAGATATCATTATATATTATTGGAAA 22050 || ||| ||||||| | | ||||||||| Sbjct 1109 ATTTGCCAAATATCATGGTGTTCTATTGGAAA 1140 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531890142037720