Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudoloma_20neurophilia_20[genbank_20GCA_5F001432165.1_202015-11-
05] 1,603 sequences; 5,248,409 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq495 230 3e-55
seq1321 104 3e-17
>seq495
Length=2372
Score = 230 bits (254), Expect = 3e-55
Identities = 581/873 (67%), Gaps = 14/873 (2%)
Strand=Plus/Plus
Query 33012 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATT 33071
|||||| |||||| |||||||| || ||||| || ||||| |||| ||||| |||||
Sbjct 277 TTTTTGATATTCAGATACACGTTTCTCAAAAAAGTTGGTTTTACCTTGTAATGAAATATT 336
Query 33072 TTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttA-AATCCCAATTCAGAAA 33130
||||||||||||||| || ||| | |||||||| ||||||| |||| ||| | ||
Sbjct 337 TTCCATGAAATCAAATGGGTTGTTCGTATTATAAACTTTTTTACAATCAAAATCTTGTAA 396
Query 33131 TCAATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAA 33190
| | ||| || |||||||||| |||| | ||| | ||||||||| |||||||
Sbjct 397 G-ATGCCATCTGCTACGAATTCTACATATTTGCACATGGAATTACAATTCATACCTATAA 455
Query 33191 GTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAA 33250
|| || || | | || ||| ||| || | || || ||| || || | | ||
Sbjct 456 GTGAGACAGGCAATGAAACATTAACAAACTCCTTCTCTATTTCTACTGCTTCCATCACAA 515
Query 33251 TAGATCTAACGGTTTCTTCACT--CGGTGGATGCAATAAATGTTTAAACATCAAACATGC 33308
| | | || | |||| | | | | | || | ||| | | | |||| ||
Sbjct 516 TTTGTTTGACTATCTCTTTATTTACCTTATTTTTAAGATATGAGTGTAT-TAAAACG-GC 573
Query 33309 GAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGG 33368
|| | | | || | ||||| |||| || || || || ||||| || || || ||
Sbjct 574 AAATTTGTAATGTAAGCCCTCATCTCGTGATATGAGCTCATTTGAAAATGTCAGACCAGG 633
Query 33369 CATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCC--AGAAAAGAAGATT 33426
||| ||| | || || | ||| || ||||| || || || |||||| ||||
Sbjct 634 CATCTTGCCTCTTTTCTTTAACCAGAAGATGGATGCAAAGGAAGAGGAGAAAAAAAGA-- 691
Query 33427 CCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGT--ATCC 33484
|||||||| ||||| || || | ||| ||| | | || | || ||||
Sbjct 692 CCTTCTACACATGCAAATGCTATCAATCTGATAGAATAGTC--CTCTTTTGAGTCAATCC 749
Query 33485 ACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGA 33544
| || | ||||| ||||| || | | | || || ||| || || ||||| |
Sbjct 750 ATTTGAAACACCAATTAGCCTTTTTCTCAATTGATGGAATATTTTTGATTGCGTTAAACA 809
Query 33545 GATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCG 33604
|| ||| ||||| | ||||||||| |||||| || || || | | ||||| || |
Sbjct 810 GAAAGTGTTTTTGTTCGTTATCTTTAATATAAGTGTCAATTAACAAAGAGTACATCTCAG 869
Query 33605 AATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTA 33664
|||| |||||||| || ||||| |||||||| |||||| | || || ||| ||| |
Sbjct 870 AATGGATGTTTTCTATCATAATCTGGAATCCGTAAAAACATTTTGCTTCTTTAAGCTGAA 929
Query 33665 CTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAA 33724
|||| | |||||| ||| ||||||||||| || ||||||||||| || || ||||
Sbjct 930 TTTCTCTTGAAAATCTTTCTAATAAATTTTCATTTACGATTCCGTCACTTGCAGCGAAAA 989
Query 33725 ACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGA 33784
| || | |||| | ||| ||||||| || | | ||| ||| ||||||| |
Sbjct 990 ATGCAAGAACATTTGATATGAAATATTGCTCACTTTCTTTTAAAGAATTAAAATCATTCA 1049
Query 33785 TATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACA 33844
||| || | ||| |||||||| |||||||| || || | | || | |||||||
Sbjct 1050 AATCACGTGAAAGATCAACTTCTTCAACTGTCCAGAAAGAGGAAACCGCATGCTTATACA 1109
Query 33845 TGTTCCAGATGTCATAATATTGGATTGGGAAAA 33877
| | ||| || |||| | || ||||| ||||
Sbjct 1110 TTTGCCAAATATCATGGTGTTCTATTGGAAAAA 1142
>seq1321
Length=4813
Score = 104 bits (114), Expect = 3e-17
Identities = 169/238 (71%), Gaps = 4/238 (2%)
Strand=Plus/Plus
Query 63195 GACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA 63254
||||||| ||| || || || || |||| |||||| | |||||||||||| | ||| ||
Sbjct 3553 GACCACTGTCCATCTTCTTTGACACGTTCCATAAACAAATCAGGAATCCATAATGCTGTA 3612
Query 63255 AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCC 63314
|| ||||||| || || || || |||||||| ||||| | || | ||| |
Sbjct 3613 AACAGATCTCGACATCGCATCTCTTCTTTACCTGTATTTTTTTTCAACTCTATGAATTCT 3672
Query 63315 ATAATATCAGAATGCCACGGTTCCAAGT-ATATGGCCATAACTCCAGGCCGTTTGTTTCC 63373
| ||| ||| |||||| |||||||| | | ||| ||| | ||||| ||||| | ||
Sbjct 3673 AGAATGTCAACATGCCATGGTTCCAAATAAAATGCGCAT-GCACCAGGGCGTTTTTGACC 3731
Query 63374 TCCCTGATCTATGTATCT-AGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63430
|||||||| ||| |||| ||| || | | | ||| | |||| | ||| | ||| ||
Sbjct 3732 ACCCTGATCGATGCATCTGAGC-GTACTCTCAAAAATTTTCAAAACTGGTACAATTCC 3788
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622934717695480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |