Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoloma_20neurophilia_20[genbank_20GCA_5F001432165.1_202015-11- 05] 1,603 sequences; 5,248,409 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq495 194 2e-44 >seq495 Length=2372 Score = 194 bits (214), Expect = 2e-44 Identities = 528/800 (66%), Gaps = 19/800 (2%) Strand=Plus/Plus Query 92875 TGGATTCTTGGCGTTATAATACTTTTCACCGATCAAC-TCGTACAATAATCTATCAGCTA 92933 ||| || || | |||||| |||||| | ||||| || | || | | ||| |||| Sbjct 352 TGGGTTGTTCGTATTATAA-ACTTTTTTACAATCAAAATCTTGTAAGATGCCATCTGCTA 410 Query 92934 CAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGACGTACAGGTAGAG 92993 | ||||||| || | |||| ||| ||||||||| |||| ||| ||||| | | Sbjct 411 CGAATTCTACATATTTGCACATGGAATTACAATTCATACCTATAAGTGAGACAGGCAATG 470 Query 92994 CGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTTCTATTACTCTAC 93053 | | | || || ||||| ||| | || ||||| ||| |||| | | ||| | | Sbjct 471 AAACATTAACAAACTCCTTCTCTATTTCTACTGCTTCCATCACAATTTGTTTGACTAT-C 529 Query 93054 TATTTGGTGG---TTTTTGTACGACATAATTGTACATTAAGCACGCAAAGTCGGTATGTA 93110 | ||| | | ||| || || || | |||| |||| ||||| | | ||||| Sbjct 530 TCTTTATTTACCTTATTTTTAAGATATGAGTGTA--TTAAAACGGCAAATTTGTAATGTA 587 Query 93111 AACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTT 93170 | || || ||||||||||| | |||||| ||||| | ||| || | | |||| || Sbjct 588 AGCCCTCATCTCGTGATATGAGCTCATTTGAAAATGTCAGACCAGGCATCTTGCCTCTTT 647 Query 93171 TCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAA 93230 |||| | ||| || || || ||||| | || ||||| | |||||| || ||||| Sbjct 648 TCTTTAACCAGAAGATGGATGCAAAGGAAGAGGAGAAAAAAAGACCTTCTACACATGCAA 707 Query 93231 ATGCCA-CAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTTAAAGCCCAA 93289 |||| | |||| | | | ||| | || | |||||||| ||| |||| Sbjct 708 ATGCTATCAATCTGATAG----AATAGTCCTCTTTTGAGTCAATCCATTTGAAACACCAA 763 Query 93290 TCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAG---GTAATCTCGC 93346 | || ||||||| ||| | || | ||| ||| |||||||| || || | | | Sbjct 764 TTAGCCTTTTTCTCAATTGATGGAATATTTTTGATTGCGTTAAACAGAAAGTGTTTTTGT 823 Query 93347 TCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTC 93406 |||| |||| || || || || ||||||| ||| ||||| |||||||||| || Sbjct 824 TCGTT---ATCTTTAATATAAGTGTCAATTAACAAAGAGTACATCTCAGAATGGATGTTT 880 Query 93407 TCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAA 93466 || || ||| ||||||||||| |||||| | ||||| | | ||| | |||| ||| Sbjct 881 TCTATCATAATCTGGAATCCGTAAAAACATTTTGCTTCTTTAAGCTGAATTTCTCTTGAA 940 Query 93467 AATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATA 93526 ||||| |||| | ||||||||| || || || || ||| || ||||| || | | | Sbjct 941 AATCTTTCTAATAAATTTTCATTTACGATTCCGTCACTTGCAGCGAAAAATGCAAGAACA 1000 Query 93527 TGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGATAGATCTTTTGAA 93586 | ||| |||| || |||| ||||| | || |||| | ||| |||| Sbjct 1001 TTTGATATGAAATATTGCTCACTTTCTTTTAAAGAATTAAAATCATTCAAATCACGTGAA 1060 Query 93587 AGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATATG 93646 ||||| |||||||| || ||||| || || | | || | || ||||| | ||| || Sbjct 1061 AGATCAACTTCTTCAACTGTCCAGAAAGAGGAAACCGCATGCTTATACATTTGCCAAATA 1120 Query 93647 TCTTGATATTGAATTGGAAA 93666 || || | || |||||||| Sbjct 1121 TCATGGTGTTCTATTGGAAA 1140 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556849641901720