Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoloma_20neurophilia_20[genbank_20GCA_5F001432165.1_202015-11- 05] 1,603 sequences; 5,248,409 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq41 140 2e-28 >seq41 Length=3466 Score = 140 bits (154), Expect = 2e-28 Identities = 178/241 (74%), Gaps = 3/241 (1%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATC-GCT 15008 ||||||| ||||||||||||||||| | ||| |||||||| || || ||||| ||| Sbjct 3199 CCACCTCTTAATCTTAAAACTAAATGTAAAGTACTTTCTTTTTGAATATTATAATCTGCT 3140 Query 15009 GAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGG 15068 | |||| | |||||||||||||| || || |||| || | ||||| || ||| Sbjct 3139 AATG-TTCTTCCATCTTCTAATTGTTTACCTGCAAATATTAATCTTTGTTGATCAGGTGG 3081 Query 15069 AATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128 ||| ||||| || || |||||| ||||||| |||| || | ||| ||| || Sbjct 3080 AATACCTTCTTTATCTTGAATTTTTGCTTTTACATTTTCAATTGAATCAGATGGTTCAAC 3021 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGA-AATAA 15187 || || || || ||||||||||| | ||||| |||||||||||||| ||| | ||||| Sbjct 3020 TTCCAATGTTATAGTTTTACCTGTTAATGTTTTAACAAAAATTTGCATCTTTAATAATAA 2961 Query 15188 A 15188 | Sbjct 2960 A 2960 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357385017788855