Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoloma_20neurophilia_20[genbank_20GCA_5F001432165.1_202015-11- 05] 1,603 sequences; 5,248,409 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq41 185 3e-41 seq188 183 1e-40 seq425 100 1e-15 seq707 95.1 5e-14 seq926 93.3 2e-13 seq1321 89.7 2e-12 seq1287 86.0 2e-11 >seq41 Length=3466 Score = 185 bits (204), Expect = 3e-41 Identities = 181/232 (78%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 391043 TATTATA-ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTG 391101 ||||| | ||| | ||||| ||||||||| | || ||||||||||| || | || |||| Sbjct 2965 TATTAAAGATGCAAATTTTTGTTAAAACATTAACAGGTAAAACTATAACATTGGAAGTTG 3024 Query 391102 AATCATCTGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTC 391161 || |||||||| |||||| | | ||| ||||||||||||||| ||||| ||||| | Sbjct 3025 AACCATCTGATTCAATTGAAAATGTAAAAGCAAAAATTCAAGATAAAGAAGGTATTCCAC 3084 Query 391162 CTGATCAACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGG 391221 ||||||||||| | ||||| || |||| |||||| | |||||||||||||| || || | Sbjct 3085 CTGATCAACAAAGATTAATATTTGCAGGTAAACAATTAGAAGATGGAAGAACATTAGCAG 3144 Query 391222 ATTATAATATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGG 391273 ||||||||||| | || || || | || ||||| |||||| | ||||| Sbjct 3145 ATTATAATATTCAAAAAGAAAGTACTTTACATTTAGTTTTAAGATTAAGAGG 3196 >seq188 Length=831 Score = 183 bits (202), Expect = 1e-40 Identities = 311/441 (71%), Gaps = 21/441 (5%) Strand=Plus/Minus Query 363753 AAACTAGAAGATGCTAATAAAGCAGGAACAAAAGATGCTCATAAATGTGGATTATATTTA 363812 ||| |||| ||||| ||||||||||||||||||||| | | |||||| | | | |||| Sbjct 465 AAATTAGATGATGCAAATAAAGCAGGAACAAAAGATTCAAAAAAATGTTCACTTTTTTTA 406 Query 363813 GCAGAGGGAGATTCTGCTCTTTC-TATG-ATTCTGTCAGGGTT--ATCAAGTAAAGAT-- 363866 |||| |||||||| ||| | | || | | ||| | || ||||| ||||| Sbjct 405 ACAGAAGGAGATTCAGCTAAAACATTTGCAATGTGTG-GAATTGAATCAATAAAAGAAGG 347 Query 363867 -AGAAATTTTTATGGTGCCTTTCCGTTAAAAGGAAAATTATTAAATGTAAGAGAAGCATC 363925 |||||| ||| ||| || ||||| ||||||||||||||| ||||||||||||| ||||| Sbjct 346 AAGAAATATTTTTGGAGCATTTCCATTAAAAGGAAAATTAATAAATGTAAGAGATGCATC 287 Query 363926 AGTTAAACAAATTATGGGAAATGATGAGATATCAAACCTTaaaaaaaTTTTAGGATTACG 363985 | | || |||| ||| |||||| || || || | ||||| || ||||||||| Sbjct 286 ACATGAAAAAATAATGAAAAATGAAGAATTAAATAATTTAAAAAAGATAATAGGATTACA 227 Query 363986 TAATGAATTTAAATATGAAATGGATGAAGAATTTAATACTTTAAGATATGGAAAAGTAAT 364045 ||| | |||||||||| | ||| || ||||||||||||| |||||| Sbjct 226 ACATGGAAAAAAATATGAAACAGTAGAA---------ACATTAAGATATGGAACAGTAAT 176 Query 364046 AATTTTATGTGATTCAGATGTAGATGGAAGTCATATTAAGGGACTAATTTTAAATATGTT 364105 ||| | ||| |||| |||||| ||||| || ||| || || ||||| | || Sbjct 175 AATAATGACAGATCAAGATTATGATGGATCACATATAAAAGGATTACTTATAAATTTTTT 116 Query 364106 T-CATAGTATGTGGCCTAATCTTTTAAAAAGAGAAGGTTTTATTACAACTA-TGAACACT 364163 | | | ||| | || | | | ||||||| |||||| ||| ||| || | | | || Sbjct 115 TGAACATTAT-TTTCCAAGTTTATTAAAAATAGAAGGATTT-TTAAAAGAATTTATAACA 58 Query 364164 CCAATTGTTAAAGCAACAAAA 364184 ||||| | |||||||||||| Sbjct 57 CCAATAATAAAAGCAACAAAA 37 >seq425 Length=698 Score = 100 bits (110), Expect = 1e-15 Identities = 204/297 (69%), Gaps = 17/297 (6%) Strand=Plus/Minus Query 361514 AAAAGATATAACTTTTATACCTGGTCTTTATAAAATTTATGATGAAATTATTGTAAATGC 361573 |||||| |||| || | |||| |||||||||||||| | |||||||||| |||||||||| Sbjct 545 AAAAGAGATAAATTATGTACCAGGTCTTTATAAAATATTTGATGAAATTCTTGTAAATGC 486 Query 361574 ACGTGATCATAGTATTA---ATGATAAAAGTTGTAATTCTATTGAGATTGAAGTAAATAC 361630 | ||| ||| |||| || ||||| ||| | |||| |||| | |||| Sbjct 485 AGCAGATAATAAAATTAGAGATCCTAAAATGAATAAATTAATTG---TTGATATTAATAA 429 Query 361631 TGATGAAGGATATTTTTCAGTTTATAATAATGGTGATGAAGGAATTCCAGTCAAAGAACA 361690 ||| || ||| ||||||||||||||||| | ||||| ||| | ||| || Sbjct 428 AGATAAA--ATA----TCAGTTTATAATAATGG---AAAGGGAATACCAATAAAAATTCA 378 Query 361691 TGAAACACATAAAACACTTATTCCTAGTA-TGATCTTTGGAGAATTACTAACTAGTTCAA 361749 | ||| | | || | | || || | | || ||||| ||||| | || ||||| Sbjct 377 TAAAAAAGAGAATGTGTATGTACC-AGAATTAATTTTTGGTCAATTATTGACATCTTCAA 319 Query 361750 ATTATGATGATTCTaaaaaaaGAACTACAGGCGGAATGAATGGATTAGGTTCTAAAT 361806 ||||||||||| |||||| | ||| || || | ||||||| ||| | |||| Sbjct 318 ATTATGATGATAAAGAAAAAAAAGTTACTGGTGGTAGAAATGGATATGGTGCAAAAT 262 >seq707 Length=2074 Score = 95.1 bits (104), Expect = 5e-14 Identities = 169/245 (69%), Gaps = 4/245 (2%) Strand=Plus/Plus Query 364743 CAAAATTTTGTTGGAAGTAATAATGTAAATTTACTAGAACCAAAAGGACAATTTGGAAGT 364802 || |||||| | ||| |||||| ||||| | || | || | ||||||||||| | Sbjct 531 CATAATTTTATAGGATCAAATAATATAAATCTTTTATATCCTGATGGACAATTTGGTTCT 590 Query 364803 CGAGTAATGGGAGGTAAAGATTCTGCCAGCCCACGTTATATTTGGACCAAACTTGAAAAA 364862 || || ||||| |||||| | || ||| | ||||||| || ||| | |||||| Sbjct 591 CGTAGAAAAGGAGGAAAAGATGCAGCATCACCAAGATATATTTCAACAAAATTAGAAAAA 650 Query 364863 GTGGCAGGATTAATATTTAGAAAAGAAGATAATCCAATT--TTAAATTATATTAATGATG 364920 | || |||| || |||| | || |||| || |||| ||||||||||| | || | Sbjct 651 ATAACAAGATTTATTTTTAAAGAAATAGATGAT--AATTTATTAAATTATATAGAAGAAG 708 Query 364921 ATGGATTAATGGTTGAACCTGAATTTTATCTTCCTATTATTCCTATGATTTTAGTAAATG 364980 || |||| | ||||| || |||| | || ||||| || ||||| | |||||| Sbjct 709 ATAATATAATTGGAGAACCATTATATTATATACCAATTATACCAATGATACTTATAAATG 768 Query 364981 GAGCA 364985 ||||| Sbjct 769 GAGCA 773 >seq926 Length=46699 Score = 93.3 bits (102), Expect = 2e-13 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 248487 ACATGGACAAAAAGGAACAGTTGGTATTACTTTGCCACAAAGAGATATGCCTTTCACATC 248546 ||| |||||||| || ||| ||||||||||||| |||| ||||||||| |||||| Sbjct 16956 ACACGGACAAAAGGGTACAATTGGTATTACTTTAAGACAAGAAGATATGCCATTCACAGA 17015 Query 248547 AGAAGGTATGACTCCAGATTTAATTTTCAATCCACATGGTATGCCTACACGTATGACTAT 248606 |||||| || || ||| |||| | |||||||| |||| || | |||||||| || Sbjct 17016 AGAAGGCATTGTACCTGATATAATCATAAATCCACACTGTATACCATCTCGTATGACAAT 17075 Query 248607 GGGACAATT 248615 ||||| || Sbjct 17076 TGGACACTT 17084 >seq1321 Length=4813 Score = 89.7 bits (98), Expect = 2e-12 Identities = 141/200 (71%), Gaps = 4/200 (2%) Strand=Plus/Minus Query 502358 AAAATATGGAACTAGAAACAGTTTGCTTACAGCACTAATGCCAACAGCATCTACATCTCA 502417 ||| ||||| ||||||||| |||| || | ||||||||||||||| |||||| || Sbjct 2568 AAATTATGGTCTGAGAAACAGTATGCTCACTTCTCTAATGCCAACAGCAAGTACATCACA 2509 Query 502418 ACTATTAGGCAATT--ATGAATCATTTGAACCATTTACTTCTAATATATATACTAGAAGA 502475 |||| | ||| |||| | |||||||||||||| || ||| | || | |||||| Sbjct 2508 G--ATTATGGGATTTAATGAGTGTTTTGAACCATTTACATCCAATTTCTACGCCAGAAGA 2451 Query 502476 ACTTTAGCAGGTGAATTTATAGTTGTTAATAAACATTTAATAAATGATTTGAATGAAATC 502535 || | ||||| || ||| | | || ||| ||||| |||| ||| | | || | Sbjct 2450 ACGCTTGCAGGAGATTTTCAGATCATAAACAAATATTTACTAAAAGATCTCATACAATTA 2391 Query 502536 GGTGAATGGACTAATGAAAT 502555 ||| ||||| | |||| || Sbjct 2390 GGTCTATGGAATGATGAGAT 2371 >seq1287 Length=5029 Score = 86.0 bits (94), Expect = 2e-11 Identities = 64/74 (86%), Gaps = 2/74 (3%) Strand=Plus/Minus Query 509506 GCCTTATTAGCTCAGTTGGATTAGAGCAGCAGGCTTTTAACCTGATGGTCGTGGGTTCGA 509565 ||||| |||||||||| || ||||||| ||| ||||||| |||| |||||||||||||| Sbjct 80 GCCTTGTTAGCTCAGTCGG--TAGAGCATCAGACTTTTAATCTGAGGGTCGTGGGTTCGA 23 Query 509566 GTCCCACATAAGGC 509579 | |||||||| ||| Sbjct 22 GCCCCACATAGGGC 9 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975677821831124