Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoloma_20neurophilia_20[genbank_20GCA_5F001432165.1_202015-11- 05] 1,603 sequences; 5,248,409 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq188 131 1e-24 seq707 102 6e-16 >seq188 Length=831 Score = 131 bits (144), Expect = 1e-24 Identities = 294/435 (68%), Gaps = 14/435 (3%) Strand=Plus/Minus Query 635394 AAAAATTATATAATGCTCACAAGGCAGGAACCAAAGAAGGATATAAATGTACCCTAATTT 635453 |||||||| || |||| | || |||||||| ||||| | | |||||| | || ||| Sbjct 467 AAAAATTAGATGATGCAAATAAAGCAGGAACAAAAGATTCAAAAAAATGTTCACTTTTTT 408 Query 635454 TGACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCTGGTCTT-AAT-GTTA----TTG 635507 | ||||| |||||||||||||||||||| || |||| ||| || ||| || | Sbjct 407 TAACAGAAGGAGATTCAGCTAAAACATTTGCAATGTGTGGAATTGAATCAATAAAAGAAG 348 Query 635508 GAAGAGATTATTATGGAGTTTTCCCACTTAGAGGAAAACTTTTGAATGTTAGGGATGCTA 635567 ||||| || || ||||| || ||| | | ||||||| | | ||||| || ||||| Sbjct 347 GAAGAAATATTTTTGGAGCATTTCCATTAAAAGGAAAATTAATAAATGTAAGAGATGCAT 288 Query 635568 GTCCTaaaaaaaTTGCTGATAATGAGGAAATTACAGCAATCaaaaaa-aTTGTTGGACTT 635626 | | ||||||| | ||||| | ||||| | | | |||||| || | ||| | Sbjct 287 CACATGAAAAAATAATGAAAAATGAAG-AATTAAATAATTTAAAAAAGATAATAGGATTA 229 Query 635627 GAACAAGGAAAAGTTTATGATGATCTCAAAGGTTTACGATATGGTAGTATTATGATTCTT 635686 |||| |||||| ||||| | || ||| ||||||| | | || || | Sbjct 228 CAACATGGAAAAAAATATGAAACAGTAGAAACATTAAGATATGGAACAGTAATAATAATG 169 Query 635687 GCTGATCAAGATGTTGATGGGTACCATATCAAAGGATTAATCATGAATTTTAT---CCAT 635743 | ||||||||| |||||| | ||||| ||||||||| | || |||||| | ||| Sbjct 168 ACAGATCAAGATTATGATGGATCACATATAAAAGGATTACTTATAAATTTTTTTGAACAT 109 Query 635744 TGTTTTTGGCCATCTCTCGTTAAATACGAAGGGTTTATTCAATCATTTGCAACTCCACTA 635803 | |||| ||| | | | ||| ||||| ||| | || |||| ||| ||| || Sbjct 108 TATTTT---CCAAGTTTATTAAAAATAGAAGGATTTTTAAAAGAATTTATAACACCAATA 52 Query 635804 TTAAAAGCCACCAAA 635818 ||||||| || ||| Sbjct 51 ATAAAAGCAACAAAA 37 >seq707 Length=2074 Score = 102 bits (112), Expect = 6e-16 Identities = 459/713 (64%), Gaps = 31/713 (4%) Strand=Plus/Plus Query 636202 AGATGATCGAAAAATTTGGATCAATACTTATAATCCGGACAACTATCTAGATCCTTCAAA 636261 ||||||| ||||| | ||| | || | || |||||| | | | | |||||| ||| | Sbjct 224 AGATGATAGAAAATTATGGTTAAAAAATTGTAATCCTAATACTTTTTTAGATCATTCTAT 283 Query 636262 AAAGAGAATCTCTTATTAT--GATTTCATTCACAAAGAACTTATTACTTTTTCTGTGGAT 636319 | || ||| | | || ||||| ||| | |||||| | ||| ||||||| ||| Sbjct 284 TA-GA-AATATAAAAATAACAGATTTTATTAATAAAGAATTAATTCTTTTTTCTATGGCA 341 Query 636320 GACGTTCTTAGATCTGTTCCTAATTTAATGGATGGATTTAAACCATCACATCGCAAAGTA 636379 || | ||||| | ||||| |||||| ||||| ||||||||| ||| | |||||| Sbjct 342 GATAATATTAGAAGTATTCCTTCTTTAATAGATGGTTTTAAACCAGGACAAAGAAAAGTA 401 Query 636380 TTTTATGGTTCTGTTGAAAAGAATATTTATAAGCAAGAGATTAAAGTATCAGATTTGACT 636439 ||| | || ||| |||| | ||||| | ||| ||||| | | || | | Sbjct 402 ATTTTTATTT--GTTTAAAATATAATTTA-ATTCAATCACAAAAAGTTGTACAATTAAGT 458 Query 636440 GGT----TTTGTCTCGAATATGACGAAATATCATCATGGTGATCAATCATTATCATCAAC 636495 ||| ||| | ||| | | | || ||||||||||| ||| || ||| | ||| Sbjct 459 GGTAAAATTT---TAGAAAAAG-CAAATTATCATCATGGAGATGTTTCTTTACAACAAAC 514 Query 636496 TATTGTCGGAATGGCTCAAAATTATGTGGGAAGTAACAATCTCAATTTGTTAATGCCATT 636555 ||| | | | |||| |||| | | ||| || ||| | ||| | ||| || Sbjct 515 AATTATAAAATTAACTCATAATTTTATAGGATCAAATAATATAAATCTTTTATATCCTGA 574 Query 636556 GGGAATGTTTGGATCTAGATTGACCGGAGGTAAAGATTCAGCGAGTCCTAGGTAT--TTG 636613 ||| ||||| ||| | | ||||| |||||| |||| || || ||| || Sbjct 575 TGGACAATTTGGTTCTCGTAGAAAAGGAGGAAAAGATGCAGCATCACCAAGATATATTTC 634 Query 636614 AACACTAAATTAGATGATTTGGCAAAGAAAATCTTCATTGATTATGATTTTGAT-ATTCT 636672 |||| |||||||| | | ||| || || ||| | | || | ||| || | Sbjct 635 AACA--AAATTAGAAAAAATAACAA-GA-----TTTATTTTTAAAGAAATAGATGATAAT 686 Query 636673 TCA--ACATCAGTCAGAAGATAATTGTCGAATTG---AACCTGTTTATTATGCTCCTATT 636727 | | | || | |||||| || | ||||| |||| | |||||| || ||| Sbjct 687 TTATTAAATTATATAGAAGAAGATAATATAATTGGAGAACCATTATATTATATACCAATT 746 Query 636728 ATTCCAATGATACTTGTAAATGGAGCTGAAGGAATTGGTACTGGATATTCAACAAAAATT 636787 || |||||||||||| |||||||||| || ||||| || || |||| | ||||||||| Sbjct 747 ATACCAATGATACTTATAAATGGAGCAGATGGAATAGGAACAGGATGGTTAACAAAAATA 806 Query 636788 TATCCTTGTAATCCTCGAGATATTATCGCAAACATCAAAAGACTTTTGACAAATGAAAAT 636847 || |||| | |||||| || ||| || |||||||| || | | || | Sbjct 807 CCAAATTATAATATTTTAGATATAATAAAAAATATAGAAAGACTTATGGAAGAAAAAGAA 866 Query 636848 CCCAAAACAATGAAACCTTGGTTTAGACATTTGACAGGTACAATTGAGAAAAT 636900 || | || ||||| ||| | | |||| || | ||||| ||| || |||| Sbjct 867 CCAATAAAAATGATACCATTTTATAGAGGATTTAAAGGTAAAATAGAAGAAAT 919 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780742853859718