Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoloma_20neurophilia_20[genbank_20GCA_5F001432165.1_202015-11- 05] 1,603 sequences; 5,248,409 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq495 307 1e-78 seq1321 131 2e-25 >seq495 Length=2372 Score = 307 bits (340), Expect = 1e-78 Identities = 591/869 (68%), Gaps = 7/869 (1%) Strand=Plus/Plus Query 18669 TTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACA 18728 |||||||||||| | || | ||| ||||| || || ||||| || | |||||| ||| Sbjct 277 TTTTTGATATTCAGATACACGTTTCTCAAAAAAGTTGGTTTTACCTTGTAATGAAATATT 336 Query 18729 TTCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAG 18788 |||||| ||||||||||| || || |||||| | |||||| | | || ||| || Sbjct 337 TTCCATGAAATCAAATGGGTTGTTCGTATTATAAACTTTTTTACAATCAAAATCTTGTAA 396 Query 18789 TAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAA 18848 | | ||| ||||| |||| | |||| || ||| || ||||||||| ||||| | Sbjct 397 GATGCCATCTGCTACGAATTCTACATATTTGCACATGGAATTACAATTCATACCTATAAG 456 Query 18849 TTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAAT 18908 | ||||| | || | | ||| ||| || | ||||| | |||||| || | ||| Sbjct 457 TGAGACAGGCAATGAAACATTAACAAACTCCTTCTCTATTTCTACTGCTTCCATCACAAT 516 Query 18909 AGATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACATCAAACATGCAAA 18968 | ||| | |||| ||| | | ||||| | || ||| ||||| Sbjct 517 TTGTTTGACTATCTCTTTATTTACCTTATTTTTAAGATATGAGTGTATTAAAACGGCAAA 576 Query 18969 ATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCAT 19028 | |||||| ||||| |||| ||| | ||||| |||||||| | ||||||||| Sbjct 577 TTTGTAATGTAAGCCCTCATCTCGTGATATGAGCTCATTTGAAAATGTCAGACCAGGCAT 636 Query 19029 CAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTC 19088 | |||||||| ||||||||||| || || ||||| || || || || | |||||| Sbjct 637 CTTGCCTCTTTTCTTTAACCAGAAGATGGATGCAAAGGAAGAGGAGAAAAAAAGACCTTC 696 Query 19089 TACTGCTGCAAAAGCAACTAGTCTTTCTCCATA-ACTAG-CATCATTATTATGAATCCAT 19146 ||| |||||| || | | ||| ||| | ||| | || || | ||||||| Sbjct 697 TACACATGCAAATGCTATCAATCTG-----ATAGAATAGTCCTCTTTTGAGTCAATCCAT 751 Query 19147 TTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGA 19206 || | ||||| |||||| || | | |||| || | | || | ||||| ||| Sbjct 752 TTGAAACACCAATTAGCCTTTTTCTCAATTGATGGAATATTTTTGATTGCGTTAAACAGA 811 Query 19207 TACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAA 19266 | | || ||||||||| ||| | || || || ||| |||||| || ||| Sbjct 812 AAGTGTTTTTGTTCGTTATCTTTAATATAAGTGTCAATTAACAAAGAGTACATCTCAGAA 871 Query 19267 TGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACT 19326 || || |||||||| ||||| ||||||||||||||| |||||||| | | ||| | | Sbjct 872 TGGATGTTTTCTATCATAATCTGGAATCCGTAAAAACATTTTGCTTCTTTAAGCTGAATT 931 Query 19327 TCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAAT 19386 || || |||||||||| | ||||||||||| || ||||| ||||| || || |||||| Sbjct 932 TCTCTTGAAAATCTTTCTAATAAATTTTCATTTACGATTCCGTCACTTGCAGCGAAAAAT 991 Query 19387 GCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATTCCAATCATTAATA 19446 || | |||| | || |||| || ||| | |||| | ||| ||||||| | | Sbjct 992 GCAAGAACATTTGATATGAAATATTGCTCACTTTCTTTTAAAGAATTAAAATCATTCAAA 1051 Query 19447 TCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATG 19506 || || | ||| ||||||||||||||||| ||||| | | || | |||||||| Sbjct 1052 TCACGTGAAAGATCAACTTCTTCAACTGTCCAGAAAGAGGAAACCGCATGCTTATACATT 1111 Query 19507 TTCCATATATCACGATATTGTATAGGAAA 19535 | ||| |||||| | | || ||| ||||| Sbjct 1112 TGCCAAATATCATGGTGTTCTATTGGAAA 1140 >seq1321 Length=4813 Score = 131 bits (144), Expect = 2e-25 Identities = 349/532 (66%), Gaps = 12/532 (2%) Strand=Plus/Plus Query 47894 ATTACATACAGCTACCTCATTTGGATTAGTATATTGTATTATTTCAGCACATAGATTACC 47953 ||| || ||||||| |||| ||| |||||||| || ||||| ||||| ||||||| Sbjct 3264 ATTGCAAACAGCTATTTCATCTGGTGAAGTATATTCTACAATTTCTGCACAGAGATTACT 3323 Query 47954 ACATTTGATAGTACCCAAATTTTGATGATTATTNNNNTTGTTACATGCGTCCTTGTAAAG 48013 ||| ||| || || | || || ||||| || |||||| || ||| ||||| | Sbjct 3324 TGATTGGATCGTGCCAAGATGTTTTTGATTGTTACATTTGTTAATTGTGTCTTTGTATAA 3383 Query 48014 CATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATTTCCAAACAGTCCTAGC 48073 |||| | || || ||||| ||||| ||| ||||| |||||||||| | | || Sbjct 3384 CATATATGGCAGCCCTGTTTCAATCTGTGATGAAATGAGCGATTTCCAAATAACCTGTGC 3443 Query 48074 CTTTATAACAGCTCTAGCT------TTATTATCATGTTCGTATTTAGTATATAACTTCTC 48127 | || ||| ||| || || || | || | || |||| | ||| Sbjct 3444 TCTGATTGTTCGTCTGGCTGTGCCCTTTTTCTCTTCTTGG-AT---GTATTTTTCTTTG- 3498 Query 48128 AAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACACATCAATGACCA 48187 ||||| || ||||| | | || ||| || || ||||| ||| | | | |||||| Sbjct 3499 -AATTCTTCGCCATATAAAAGATTTAAGCCTGGCACTTCATCAGGTGAAAAAAGTGACCA 3557 Query 48188 ATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATAAATAA 48247 | |||| | ||| || | |||||| | ||| || ||||| | ||| |||| | Sbjct 3558 CTGTCCATCTTCTTTGACACGTTCCATAAACAAATCAGGAATCCATAATGCTGTAAACAG 3617 Query 48248 ATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTAT 48307 ||| | | || | ||||| || || |||| |||| | || | || || | || Sbjct 3618 ATCTCGACATCGCATCTCTTCTTTACCTGTATTTTTTTTCAACTCTATGAATTCTAGAAT 3677 Query 48308 ATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCCTTG 48367 ||| ||||||||||||| ||||| | ||| | |||| || ||||| | ||| || || Sbjct 3678 GTCAACATGCCATGGTTCCAAATAAAATGCGCATGCACCAGGGCGTTTTTGACCACCCTG 3737 Query 48368 ATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 ||| || ||||| ||| | | | ||| | | || | ||| ||||| ||| Sbjct 3738 ATCGATGCATCTGAGCGTACTCTCAAAAATTTTCAAAACTGGTACAATTCCA 3789 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562097536744920