Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoloma_20neurophilia_20[genbank_20GCA_5F001432165.1_202015-11- 05] 1,603 sequences; 5,248,409 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq41 159 3e-33 seq425 156 3e-32 seq707 141 7e-28 seq1321 120 2e-21 seq188 107 2e-17 seq1509 86.0 5e-11 >seq41 Length=3466 Score = 159 bits (176), Expect = 3e-33 Identities = 157/199 (79%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 563278 GTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTTTCCG 563337 ||||||||||| |||||| ||||| |||| |||||| |||||| | |||||| || Sbjct 3169 GTACTTTCTTTTTGAATATTATAATCTGCTAATGTTCTTCCATCTTCTAATTGTTTACCT 3110 Query 563338 GCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGTTTT 563397 ||||| || | |||||| |||||||| ||||| ||||||||||||||||||||| |||| Sbjct 3109 GCAAATATTAATCTTTGTTGATCAGGTGGAATACCTTCTTTATCTTGAATTTTTGCTTTT 3050 Query 563398 ACTGCCTCAATTGTATCAGTGTGAGTACA--TTCGAGAGTAACAGTTTTACCAGTAAGAG 563455 || ||||||| ||||| || || || ||| | || | ||||||||| || | | Sbjct 3049 ACATTTTCAATTGAATCAGA-TG-GTTCAACTTCCAATGTTATAGTTTTACCTGTTAATG 2992 Query 563456 TTTTAACGAAAATTTGCAT 563474 ||||||| ||||||||||| Sbjct 2991 TTTTAACAAAAATTTGCAT 2973 >seq425 Length=698 Score = 156 bits (172), Expect = 3e-32 Identities = 325/478 (68%), Gaps = 16/478 (3%) Strand=Plus/Plus Query 430079 AATTTTTTAAAATCTGGTATAAAACTAAttttagtgtatggtgtttttgatttggttgta 430138 ||| |||| |||||||| ||||| | ||||| || ||| | ||| ||| || Sbjct 87 AATCTTTTTAAATCTGGAATAAATGTTATTTTTGTAAATGATTCATTTATTTTTTTTTCT 146 Query 430139 gtaatttttggtttttctttagtatacatattatcagtaaatttttgataa-aatttttt 430197 | || |||||| ||||||| | ||||||| | | | ||||||||||| ||| | Sbjct 147 TTTATAATTGGTTCTTCTTTAATTGACATATTTTTTGAATATTTTTGATAATAATAAAGT 206 Query 430198 ACCACGT--TTAGCGTCTATGGTTTCAATATGAAATTCAGTTGAATATATATTCGCTAAT 430255 | | | ||| | || ||||| ||| |||||| ||||| | ||||| |||| Sbjct 207 CCTTCTTCTTTATCTGCT---GTTTCTATAATAAATTCTTTTGAAAAAATATTACATAAT 263 Query 430256 TTTGCTCCGAATCCATTTTTACCACCAACAAtttttttttCACCTTTATCATAATTAGTG 430315 ||||| || |||||||| |||||||| || ||||||||| | ||||||||| | Sbjct 264 TTTGCACCATATCCATTTCTACCACCAGTAACTTTTTTTTCTTTATCATCATAATTTGAA 323 Query 430316 GATGTTAATAGTTCTCCAAAAATCATCGATGGTACCATGATTTTATGTTCTTTATGCTCG 430375 ||||| |||| || |||||||| | |||||| | || | || |||||| Sbjct 324 GATGTCAATAATTGACCAAAAATTAATTCTGGTACATACACATTCTCTTTTTTATGAATT 383 Query 430376 ACGACATCAATACCATCACCATTATTCCAAACACTAATTTCTCCAGATTCTTCATTGATG 430435 | || || | |||||||| |||| |||| |||| ||| || Sbjct 384 TTTATTGGTATTCCCTTTCCATTATTATAAACTGATATTTTA------TCTTTATTAATA 437 Query 430436 TCGACTTTTATCATATTACATGATTTGCATCTTTTACT--ATGATCCGCTGAATTTACAA 430493 || || ||| |||| ||| || | |||| | | | || ||| |||| |||||||| Sbjct 438 TCAACAATTAATTTATT-CATT-TTAGGATCTCTAATTTTATTATCTGCTGCATTTACAA 495 Query 430494 GAACTTCATCATATATTTTATAAAGTCCTGGTACATAAGATATTTCTTTAAAAATTAT 430551 ||| ||||||| ||||||||||||| |||||||||||| ||| ||||| ||||||| Sbjct 496 GAATTTCATCAAATATTTTATAAAGACCTGGTACATAATTTATCTCTTTTGAAATTAT 553 >seq707 Length=2074 Score = 141 bits (156), Expect = 7e-28 Identities = 405/614 (66%), Gaps = 13/614 (2%) Strand=Plus/Minus Query 428083 TGCTATTTTAGTTGAATAACCGGTTCCAATTCCTTCTGTACCATTTACAAGAATCATTGG 428142 || |||||| ||| | | || ||||| ||||| |||| ||||||| ||| |||||||| Sbjct 809 TGGTATTTTTGTTAACCATCCTGTTCCTATTCCATCTGCTCCATTTATAAGTATCATTGG 750 Query 428143 AATGACTGGTGCATAATATTGTGGTTCAATCATTTTATTATCTTCATATTGTAAATGTAA 428202 || | |||| ||||||| |||||| ||| |||||||||| | | ||| ||| Sbjct 749 TATAATTGGTATATAATATAATGGTTCTCCAATTATATTATCTTCTTCTATATAATTTAA 690 Query 428203 AATATCAAAATCATGCTCGATAAATAtttttttAGCCAATTCATCAAGTTGTGTAAAGAT 428262 | || | ||| || |||| || | | | | || || | || ||| | || Sbjct 689 TAAATTATCATCTATTTCTTTAAAAATAAATCTTGTTATTTTTTCTAATTTTGTTGAAAT 630 Query 428263 ATATCTTGCGCTTGCGGAATCTTTACCTCCTGACATTCTAGTTCCAAATTGTCCATTAGG 428322 |||||||| ||| | |||||| |||||| | | || ||||||||||||| ||| Sbjct 629 ATATCTTGGTGATGCTGCATCTTTTCCTCCTTTTCTACGAGAACCAAATTGTCCATCAGG 570 Query 428323 CATCAATAAATTAATATTATTACTTCCCACATAATTTTGGGCCATATTAACAATGGTACT 428382 || | ||| |||||||| ||| | | |||| || | | || | ||| || | Sbjct 569 ATATAAAAGATTTATATTATTTGATCCTATAAAATTATGAGTTAATTTTATAATTGT--T 512 Query 428383 AGT--TAAGGATTGTTCACCATGATGATATTTAGTTCTTTTTGAAACTGCACCTTGTAAT 428440 || ||| || || ||||||||||| || | | ||| | ||| | ||| |||| Sbjct 511 TGTTGTAAAGAAACATCTCCATGATGATAATTTGCTTTTTCTAAAATTTTACCACTTAAT 452 Query 428441 TCTGATACCTTTATTTCTTCTTTA--TAAATACCTTCTTCTACTGATCCATAAAATACTT 428498 | | | | ||| ||| | || | ||||| | || || || | ||| ||||| Sbjct 451 TGT-ACAACTT--TTTGTGATTGAATTAAATTATATTTTAAACAAAT--AAAAATTACTT 397 Query 428499 TGCGTTGTGATGGTTTGAATCCATCCATAATATTAGGTATAGATCTTAAATTATCATCCA 428558 | | |||| |||||| || ||||| || | | ||| ||| ||| | |||||| ||| Sbjct 396 TTCTTTGTCCTGGTTTAAAACCATCTATTAAAGAAGGAATACTTCTAATATTATCTGCCA 337 Query 428559 CTGAGAATGATATTAGTTCTTGATGAATGAAATCATAATATGATACTCGTTTTTGT-GCA 428617 || || |||| ||||| || ||| ||||| | ||| | | || | | | | Sbjct 336 TAGAAAAAAGAATTAATTCTTTATTAATAAAATC-TGTTATTTTTATATTTCTAATAGAA 278 Query 428618 TTATCAATGTAATTGTTGGGATTATAAGTATTTACCCATATTTTTCGATCATTTTCTCtt 428677 | ||| | || | || |||||| || | |||| ||||| ||||| ||||| | | | Sbjct 277 TGATCTAAAAAAGTATTAGGATTACAATTTTTTAACCATAATTTTCTATCATCTGATTTA 218 Query 428678 tttttATCAAAAGC 428691 |||||| ||||||| Sbjct 217 TTTTTACCAAAAGC 204 >seq1321 Length=4813 Score = 120 bits (132), Expect = 2e-21 Identities = 322/489 (66%), Gaps = 19/489 (4%) Strand=Plus/Plus Query 684257 ATTCCAAAGACCTAAATCAATTAAATCCTGAACTAAATATTTATTAATGACATAATAATC 684316 |||||| |||||||| | || | ||| | | ||||||||| || |||| | | |||| Sbjct 2379 ATTCCATAGACCTAATTGTATGAGATCTTTTAGTAAATATTTGTTTATGATCTGAAAATC 2438 Query 684317 TCCAGCTAAAGTACTTCTTGAATAAATATTTTCAGTAAAGGGCTCGATGCACTCATTGTA 684376 ||| || | || ||||| | || | ||| ||||| || || | |||||||| | Sbjct 2439 TCCTGCAAGCGTTCTTCTGGCGTAGAAATTGGATGTAAATGGTTCAAAACACTCATTAAA 2498 Query 684377 ACCCATGATTTGAGAAGTACTTGCTGTGGGCATACAAGTAGTTGTTAAACTATTTCTAAC 684436 ||||| || || || ||||||||||| ||||| || ||| | ||| ||||| | Sbjct 2499 TCCCATAATCTGTGATGTACTTGCTGTTGGCATTAGAGAAGTGAGCATACTGTTTCTCAG 2558 Query 684437 ACCATATTTTTGGATATCTATCATCAAACTATCCCAATCCCACATTCCACTTAATTTATC 684496 |||||| ||| ||||| | | ||| | | |||||| || | |||| Sbjct 2559 ACCATAATTTACGATATTTCTTCTCAGATTTGACCAATCAAACGGT--------GTTAT- 2609 Query 684497 CGAGCTAAGATTCC--ATAAATCAAATTGGAATTTTCCTTTGGAAAGAGGACTTCCTATA 684554 ||| || || | |||||||| || || | ||||| || |||| |||| | Sbjct 2610 -TGGCT-TGACACCGTAAAAATCAAAATGTAAAATCCCTTTTGATGCAGGAGATCCTTCA 2667 Query 684555 AATGTTTCATAAGCACCAAATTCTTTGGATAATTTCATTGATTCTTCCAGACAACCAAAA 684614 |||| ||| | || ||| ||| | ||||| |||||||| || | |||| Sbjct 2668 AATGACGAATATGGTCCGTATTGTTTTGCCAATTTGCAAGATTCTTCAAGTGCAGCAAAT 2727 Query 684615 TAAATAGTTTCAAATAT---TTTACGATTGAGATCGCGAGCCAATTCAGAATCAAATGGT 684671 | ||| |||||||| || ||| || || || || || |||||||||||||| Sbjct 2728 TGAATCGTTTCAAAAATCAATTT---GTTCAGTTCTCGTGCTTTATCAGAATCAAATGGC 2784 Query 684672 GTTTTAAAAATCGCAAAAACATCCGCTACTCCTTGGACACCAACACCAATTGGCCTATGT 684731 | ||| || |||||| ||| || | ||||| | || | ||||| ||| |||||| Sbjct 2785 AATCTAAGCATTACAAAAAGATCTGCCAGGCCTTGTATGCCTAAACCAAGTGGTCTATGT 2844 Query 684732 TTAATATTA 684740 || | |||| Sbjct 2845 TTGAAATTA 2853 >seq188 Length=831 Score = 107 bits (118), Expect = 2e-17 Identities = 289/436 (66%), Gaps = 12/436 (3%) Strand=Plus/Plus Query 429032 TTTGTGGCTTTTAATAAAGGTGTTGCAAAGGATTGTATAAATCCTTC-ATATTTCGCCAA 429090 ||||| ||||||| || |||||| ||| || || ||||||||| || ||| || Sbjct 38 TTTGTTGCTTTTATTATTGGTGTTATAAATTCTTTTAAAAATCCTTCTATTTTTAATAAA 97 Query 429091 CGAAGGCCAGAAACGATGTATTAAATTCATAATCAATCCTTTAATATGATAACCGTCCAC 429150 | || | || | | | ||||| |||| |||||||| ||||| | || || Sbjct 98 CTT-GGAAAATAATGTTCAAAAAAATTTATAAGTAATCCTTTTATATGTGATCCATCATA 156 Query 429151 GTCTTGGTCAGCTAATATCATAATACTACCATACCTAAGTTCTTTTAGATCATTATATAC 429210 ||||| || | | ||| || | | ||||| || | | || || | |||| Sbjct 157 ATCTTGATCTGTCATTATTATTACTGTTCCATATCTTAATGTTTCTACTGTTTCATATTT 216 Query 429211 TTTCCCTTGTTCAAGACCAATGAtttttttGATAGCAGTTATTTCTTCATTTT--CTGCT 429268 ||| || |||| | || || || ||||| | | | ||| ||||||||||| | | Sbjct 217 TTTTCCATGTTGTAATCCTATTATCTTTTTTAAATTATTTAATTCTTCATTTTTCATTAT 276 Query 429269 ATTTTCAACGGACTTTTTGTACGTACATTCAATGGTTTTCCCTTAAGTGGAAATACGCCA 429328 |||||| || | | | | |||||| | | |||||| || | ||||||| | ||| Sbjct 277 TTTTTCATGTGA-TGCATCT-CTTACATTTATTAATTTTCCTTTTAATGGAAATGCTCCA 334 Query 429329 TAATAATCTCGACC------AATAACATTTAGTCCAGACATTGCAAAAGTTTTAGCTGAA 429382 || || || || || | | |||| |||||||||| |||||||||||| Sbjct 335 AAAATATTTCTTCCTTCTTTTATTGATTCAATTCCACACATTGCAAATGTTTTAGCTGAA 394 Query 429383 TCTCCTTCCGTCAAAATAAGTGTACATTTATATCCTTCTTTGGTACCAGCTTTGTGAGCA 429442 |||||||| || |||| ||||| |||||| | | ||||| || || ||||| | ||| Sbjct 395 TCTCCTTCTGTTAAAAAAAGTGAACATTTTTTTGAATCTTTTGTTCCTGCTTTATTTGCA 454 Query 429443 TTATATAATTTTTCAT 429458 | || |||||||| || Sbjct 455 TCATCTAATTTTTTAT 470 >seq1509 Length=28330 Score = 86.0 bits (94), Expect = 5e-11 Identities = 293/447 (66%), Gaps = 15/447 (3%) Strand=Plus/Plus Query 393937 AAAATTAGCTCCTGGATATACACGACGTCCATTTTTTACTAATTGTGTTAAATATTCAAT 393996 |||||| |||||||||||| | ||||||| ||||| | || | ||| ||| | Sbjct 1454 AAAATTTGCTCCTGGATATTTATATGGTCCATTATTTACCATTTTTTGTAATGATTTTAA 1513 Query 393997 GTTATGTTTTGTCACAATTTCATCAAATGT-TAAATTCATTGCAATAATTTGTGGTAGTC 394055 ||| |||| || |||| |||||| | |||| |||||||| | || | || Sbjct 1514 ATTAAAAGTTGTTACTTTTTCTGGAAATGTATGAATTT-TTGCAATATGTAAAGGAACTC 1572 Query 394056 CCACTTCATTAAGAGCAATATTTGGATCCGAGGTAATAACTGTACGACCTGACATATCCA 394115 | | ||| | | ||||| ||| | | |||||| | | |||| | ||| | Sbjct 1573 CTATTTCTGATAATCCTATATTACTATCAGGAGAAATAACACTTCTTGCTGAAAAATCTA 1632 Query 394116 CACGTTTTCCCATAAGATTTCCACGAATTCTACCTTCTTTACCTCGTAATCGTGACGACA 394175 | | ||||||||| | ||| || | || ||| |||||||| ||| ||||| || || | Sbjct 1633 CTCTTTTTCCCATTAAATTACCTCTAACTCTTCCTTCTTTTCCTTTTAATCTTGCAGATA 1692 Query 394176 AATCTTTTGTTAAtttttt--atttttttGCTGTGATCTTGGTAATCCTGATATATCGTT 394233 | ||||| | || | | | ||||||| ||||| ||||||||| | || | || Sbjct 1693 TA-CTTTT-TAAAGGTCTACCACTTTTTTGAAGTGATTGTGGTAATCCAGGTAAAGAATT 1750 Query 394234 CGCAAAAAATGTTGCAACATGATATTGTAATAACATAAAATCATCATTAACAC-TAT-AT 394291 | | || || |||| |||||||||||| || || |||| | | | ||| || Sbjct 1751 ATCCATTAAAGTAGCAATATGATATTGTAA------AAGATTTTCATAATCTCTTATAAT 1804 Query 394292 TTTACCA-AAGAACCATCTCCTTTGGAATTTTTTAAATTTTCGTTATTTTTGATAATATC 394350 | |||| | ||| ||| || | ||| ||||||| ||| ||| | |||||| Sbjct 1805 ATGACCAGGTGCACCTTCTTTTTCATATCTTTCTAAATTTGTATTACATTTTAAAATATC 1864 Query 394351 TACTAATTTATGAGTTAAATCGTCATC 394377 |||||||||||| | ||| || || Sbjct 1865 AGATAATTTATGAGTAAGATCATCTTC 1891 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029211226130470