Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoloma_20neurophilia_20[genbank_20GCA_5F001432165.1_202015-11- 05] 1,603 sequences; 5,248,409 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq41 122 7e-23 >seq41 Length=3466 Score = 122 bits (134), Expect = 7e-23 Identities = 186/261 (71%), Gaps = 3/261 (1%) Strand=Plus/Plus Query 28529 GTCATTTATAAGTGATTGTGTAAAAATGCAAATATTTGTAAAAACATTAACGGGTAAAAC 28588 || ||||| | | ||| | |||| |||||||| ||||| ||||||||||| |||||||| Sbjct 2949 GTAATTTAGATTTTATTAT-TAAAGATGCAAATTTTTGTTAAAACATTAACAGGTAAAAC 3007 Query 28589 CATTACCGCCGAAACGGAACCTTCAGAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCG 28647 || || ||| ||||| || || | | | || | || ||||||| || | Sbjct 3008 TATAACATTGGAAGTTGAACCATCTGATTCAATTGAAAATGTAAAAGCAAAAATTCAA-G 3066 Query 28648 ACAAAGAGGGAGTGCCCGTAGATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAG 28707 | ||||| || | || |||||||| ||| | || ||||| || |||||||| |||| Sbjct 3067 ATAAAGAAGGTATTCCACCTGATCAACAAAGATTAATATTTGCAGGTAAACAATTAGAAG 3126 Query 28708 ATTCTAAAACTATGGCCGATTATAACATTCAAAAAGAATCTACTCTGCACATGGTATTAA 28767 || | ||| | || |||||||| |||||||||||| |||| | || | || |||| Sbjct 3127 ATGGAAGAACATTAGCAGATTATAATATTCAAAAAGAAAGTACTTTACATTTAGTTTTAA 3186 Query 28768 GATTACGAGGAGGGATAATAA 28788 ||||| |||| || | || || Sbjct 3187 GATTAAGAGGTGGTAAAAAAA 3207 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425396489052537