Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoloma_20neurophilia_20[genbank_20GCA_5F001432165.1_202015-11- 05] 1,603 sequences; 5,248,409 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq1321 156 3e-32 seq425 156 3e-32 seq926 136 3e-26 seq41 136 3e-26 seq707 129 4e-24 seq188 127 1e-23 seq210 116 2e-20 >seq1321 Length=4813 Score = 156 bits (172), Expect = 3e-32 Identities = 365/544 (67%), Gaps = 29/544 (5%) Strand=Plus/Plus Query 591778 ATTCCATAAACCGAGTTCCATTAAATCTTTAATTAGATATTTGTTAATGACATAATAATC 591837 |||||||| ||| | || || | |||||| | || ||||||||| |||| | | |||| Sbjct 2379 ATTCCATAGACCTAATTGTATGAGATCTTTTAGTAAATATTTGTTTATGATCTGAAAATC 2438 Query 591838 TCCTGCTAAAGTACTTCTTGAATAAATATTTTCGGTAAATGGTTCAATACATTCATTATA 591897 |||||| | || ||||| | || | ||| ||||||||||||| ||| |||||| | Sbjct 2439 TCCTGCAAGCGTTCTTCTGGCGTAGAAATTGGATGTAAATGGTTCAAAACACTCATTAAA 2498 Query 591898 TCCTTTAATTTGAGATGTACTTGCTGTTGGCATACATGTAGTAGTTAAACTGTTTCTAAC 591957 ||| |||| || |||||||||||||||||||| | ||| | ||||||||| | Sbjct 2499 TCCCATAATCTGTGATGTACTTGCTGTTGGCATTAGAGAAGTGAGCATACTGTTTCTCAG 2558 Query 591958 ACCATA--TATCATTATCTGTTCCCGAAGAGTTTTCCAATCCCACATTCCACTTAATTTA 592015 |||||| | | ||| | ||| | ||| || |||||| || | ||| || Sbjct 2559 ACCATAATTTACGATATTTCTTCTC--AGATTTGACCAATCAAACGGT---GTTA--TTG 2611 Query 592016 TCTTCACCAAGATTCCATAAATCAAACTGGAATTTACCTTTTGAAAGTGGACTTCCCCAA 592075 ||| || | | |||||||| || || | |||||||| ||| ||| | Sbjct 2612 GCTTGAC----ACCGTAAAAATCAAAATGTAAAATCCCTTTTGATGCAGGAGATCCTTCA 2667 Query 592076 AAGGTTTCATATGGACCAGATTCTTTGGCC-ATTTGTAATGATTCTGTCATTGTTCCAAA 592134 || | |||||| || ||| ||| ||| ||||| || |||||| | || |||| Sbjct 2668 AATGACGAATATGGTCCGTATTGTTTTGCCAATTTGCAA-GATTCTTCAAGTGCAGCAAA 2726 Query 592135 ATATATAGTTTCAAATATTTTCCTATTAAGATCTCGAGCAATATCAGAATCAAATGGAAT 592194 | || |||||||| || | || || ||||| || |||||||||||||||| | Sbjct 2727 TTGAATCGTTTCAAAAATCAATTTGTTCAGTTCTCGTGCTTTATCAGAATCAAATGGCAA 2786 Query 592195 TTTAAATATAGCAAACACATCGGCTAATCCTTGTACACCAACGCCAATAGGTCTATGGCG 592254 | ||| || |||| | ||| || | ||||||| || | |||| |||||||| Sbjct 2787 TCTAAGCATTACAAAAAGATCTGCCAGGCCTTGTATGCCTAAACCAAGTGGTCTATG--- 2843 Query 592255 TAAATTTGAAACACGTGTTT-TTTCT------ACTGGATAATAATTTACATCAATAATAT 592307 ||||||| ||||| || || | ||||||| ||||| ||| || || | Sbjct 2844 ----TTTGAAATTACTGTTTCTTGCTTGTGACAATGGATAAGCATTTATATCGATGATTT 2899 Query 592308 TATT 592311 |||| Sbjct 2900 TATT 2903 >seq425 Length=698 Score = 156 bits (172), Expect = 3e-32 Identities = 353/531 (66%), Gaps = 6/531 (1%) Strand=Plus/Plus Query 357165 ATCATAAACTCGTTTTTTAAATAACGCTAATATATCATCAGATAAACCTTTTAATCCAAA 357224 ||||||||||| ||||| ||||| | |||||| ||| | ||| | ||| Sbjct 29 ATCATAAACTCTCTTTTTTAATAAATTAATTATATCTTCATCCATTTCTTCCATATGAAA 88 Query 357225 TTTTTTATAATCAGGTACGAAAgttatttttgtatatggtgtttttgttttaatatttgt 357284 | |||| |||| || | || |||||||||||| ||| | ||| |||| | | | | Sbjct 89 TCTTTTTAAATCTGGAATAAATGTTATTTTTGTAAATGATTCATTTATTTTTTTTTCTTT 148 Query 357285 tacttttggtttttctttgttatacatattatcagtaaatttttgATAAAACTTCTTTCC 357344 || |||||| |||||| | ||||||| | | | ||||||||||| | | ||| Sbjct 149 TATAATTGGTTCTTCTTTAATTGACATATTTTTTGAATATTTTTGATAATAATAAAGTCC 208 Query 357345 TCGTTTTGTGTCAACAGTTTCAATATGAAATTCAGTGGAATATATATTAGCTAATTTAGA 357404 | || | | || | ||||| ||| |||||| | ||| | |||||| |||||| | Sbjct 209 TTCTTCTTTATCTGCTGTTTCTATAATAAATTCTTTTGAAAAAATATTACATAATTTTGC 268 Query 357405 ACCAAAACCATTTTTACCACCCACTGTTTTCTTTTCGTTTTTATCATAATTAGTTGATGT 357464 |||| | |||||| ||||||| ||| ||||| || | ||||||||| | ||||| Sbjct 269 ACCATATCCATTTCTACCACCAGTAACTTTTTTTTCTTTATCATCATAATTTGAAGATGT 328 Query 357465 CAAAAGTTCTCCAAAAATCATAGATGGTACTAAAATTTTATGCTCTTTATGTTCAACCAC 357524 ||| | || |||||||| | |||||| | | || | | |||||| | Sbjct 329 CAATAATTGACCAAAAATTAATTCTGGTACATACACATTCTCTTTTTTATGAATTTTTAT 388 Query 357525 ATCAATACCATCACCATTATTCCAGACAGTAATCTTACCTGTATCTTGTTCTATATTAAC 357584 || || | |||||||| | || | || | |||||| | |||| ||| Sbjct 389 TGGTATTCCCTTTCCATTATTATAAACTGATAT------TTTATCTTTATTAATATCAAC 442 Query 357585 TTTTATTGTATTACATGTCGAACACCTATTATTATGATCTGCTGCGTTAACTAATACTTC 357644 ||| | |||| | | | | ||| | |||| ||||||||| || || | | ||| Sbjct 443 AATTAATTTATTCATTTTAGGATCTCTAATTTTATTATCTGCTGCATTTACAAGAATTTC 502 Query 357645 ATCATAAATTTTATATAAACCAGGTACATATGTTATCTCTTTATAAATTAT 357695 |||| | |||||||| | ||| |||||||| |||||||||| ||||||| Sbjct 503 ATCAAATATTTTATAAAGACCTGGTACATAATTTATCTCTTTTGAAATTAT 553 >seq926 Length=46699 Score = 136 bits (150), Expect = 3e-26 Identities = 273/397 (69%), Gaps = 6/397 (2%) Strand=Plus/Minus Query 269111 GCCTCGTTAACAATTGTGTCGGTCCACGCGCTCTAGAGTGAGTTTTATCGCCCACCATTT 269170 |||| || || | |||| || || | ||||| | || |||||| |||||| | Sbjct 17356 GCCTTGTCAAAATTTGTAGTGGCCCTCTGGCTCTGGCATGTAATTTATCTTTCACCATGT 17297 Query 269171 GTTTTAAACGCTGATAATATGTCGGACCAATAAATAT-TTTGACATGCATTTTTTCTCCC 269229 ||||||| | ||||| ||||| || |||||||| || |||| | || | || || || Sbjct 17296 GTTTTAATCTTTGATAGTATGTTGGTCCAATAAAGATCTTTGCCGTG-AGTTCTTGGCCT 17238 Query 269230 GTCATACCATTTGTCATTGTTTCATTTCCCCATGCTTCATATCCGTATGAAACTAGTTCA 269289 ||||||||||| ||||||||| || | || ||| || | | | | || | Sbjct 17237 GTCATACCATTGTACATTGTTTCTAGACCGTGTCTTTGATAGCCTTGTTCTTCCAATTGA 17178 Query 269290 TCATTTATTTTATTAATATCTAC-ACCTGTAAATGGTGTCGCATCACCATATACTCCTTT 269348 | | | ||| || | | || ||||| ||||||||| |||| || | | |||| Sbjct 17177 TT-TGCAATTTGTTCAACTGTAATACCTGAAAATGGTGTTCCATCTCCTTCTTCTCCGAC 17119 Query 269349 AATAGCACATACTTTTCCTAATAGACATTCAATCAATTGTCCAATGGTCATACGTTTTGG 269408 | |||| | |||||||| | || ||| |||||||| |||||||| |||||||| ||| Sbjct 17118 TAAAGCAGAGACTTTTCCAAGTAAACACTCAATCAAGTGTCCAATTGTCATACGAGATGG 17059 Query 269409 CATACAATTAGGATTAATAATAATATCTGGCACAAGTCCAGATTTAGTAAATGGCATATC 269468 ||||| | ||||| || || ||||| || |||| || || || ||||||||||| Sbjct 17058 TATACAGTGTGGATTTATGATTATATCAGGTACAATGCCTTCTTCTGTGAATGGCATATC 16999 Query 269469 TGC-TCTATGAATTTTAAATCCAACTGTACCTTTTTG 269504 | | | | | || ||| |||| |||||| ||||| Sbjct 16998 TTCTTGTCTTAA-AGTAATACCAATTGTACCCTTTTG 16963 >seq41 Length=3466 Score = 136 bits (150), Expect = 3e-26 Identities = 158/211 (75%), Gaps = 8/211 (4%) Strand=Plus/Minus Query 480576 GTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCA 480635 ||||||||||| || ||||||||| |||| ||||| |||||| | ||| || || Sbjct 3169 GTACTTTCTTTTTGAATATTATAATCTGCTAATGTTCTTCCATCTTCTAATTGTTTACCT 3110 Query 480636 GCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTG 480695 ||||| || | | |||||||||||| ||||| ||||| || |||||||| ||| ||| Sbjct 3109 GCAAATATTAATCTTTGTTGATCAGGTGGAATACCTTCTTTATCTTGAATTTTTGCTTTT 3050 Query 480696 ACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGT 480754 ||| |||||| | ||||| || | || || ||| | || |||||||||| || | || Sbjct 3049 ACATTTTCAATTGAATCAGATGGTTCAACTTCCAATGTTA-TAGTTTTACCTGTTAATGT 2991 Query 480755 CTTAACGAAAATTTGGAACGACATCTTTAAT 480785 ||||| |||||||| |||||||||| Sbjct 2990 TTTAACAAAAATTTG------CATCTTTAAT 2966 >seq707 Length=2074 Score = 129 bits (142), Expect = 4e-24 Identities = 484/749 (65%), Gaps = 20/749 (3%) Strand=Plus/Minus Query 355078 ATAATTTCATATTTAGCTCTTGAAATATATTTATTATTATCTATTTTTTCTACTGTTCCT 355137 |||||| ||||| || || | ||||||||||||| ||||| ||||| | | ||| Sbjct 960 ATAATT-CATATAATCCTGTTATATTATATTTATTATTTGATATTTCTTCTATTTTACCT 902 Query 355138 GTAAAATGACGATACCAAGGTTTCATTGATCTTGG---TTTTTGGTCATTAAGTATTCTA 355194 |||| | ||| | ||| ||||| | |||| ||||| || ||||| || Sbjct 901 TTAAATCCTCTATAAAATGGTATCATTTTTATTGGTTCTTTTTCTTCCATAAGTCTTTCT 842 Query 355195 ATAATATTTTCATGAATGTCTCTTGGATTACATGGTGGAACATTTGTTGAATATCCAGTG 355254 ||| |||| || || ||| |||| | ||| | |||||| | |||| || Sbjct 841 ATA--TTTTTTAT-TATATCTAAAATATTATAATTTGGTATTTTTGTTAACCATCCTGTT 785 Query 355255 CCAATACCTTCTGTTCCATTAACTAAAATCATTGGAATTACAGGTACATAAAATACTGGT 355314 || || || |||| |||||| | | |||||||| || | |||| |||| ||| |||| Sbjct 784 CCTATTCCATCTGCTCCATTTATAAGTATCATTGGTATAATTGGTATATAATATAATGGT 725 Query 355315 TCAATCATTTTATTATCTTCAAATTGATGTTGCAATACATCAAAATCATGTTGTATGAAA 355374 || ||| |||||||||| | || | |||| || | ||| || | | ||| Sbjct 724 TCTCCAATTATATTATCTTCTTCTATATAATTTAATAAATTATCATCTATTTCTTTAAAA 665 Query 355375 ATATATTTAGTTAATTGATTGAGTTGTGTGAAGATATATCGTGCACTTGCATTATCTTTG 355434 ||| || | |||| || | | || ||| | ||||||| || ||| |||||| Sbjct 664 ATAAATCTTGTTATTTTTTCTAATTTTGTTGAAATATATCTTGGTGATGCTGCATCTTTT 605 Query 355435 CCTCCACTTAATCTTGTACCAAATTGACCATTGGGAAGTAATAAATTTATGTTGTTACTT 355494 ||||| || | | ||||||||| |||| ||| ||| | |||||| || || | Sbjct 604 CCTCCTTTTCTACGAGAACCAAATTGTCCATCAGGATATAAAAGATTTATATTATTTGAT 545 Query 355495 CCAACATAATTTTGTGCCATTTTTATTATAGTTTCAGTCATTGACTGTTCTCCATGATGA 355554 || | | |||| || | | |||||| || |||| | || |||||||||||| Sbjct 544 CCTATAAAATTATGAGTTAATTTTATAATTGTTTGTTGTAAAGAAACATCTCCATGATGA 485 Query 355555 TATTTAGTTCTTTTCGAAACTGCACCTTGTAATTCAGATACTTTAATTTCTTCTTTA--T 355612 || || | | ||| ||| | ||| ||||| |||| ||| | || | | Sbjct 484 TAATTTGCTTTTTCTAAAATTTTACCACTTAATTGTACAACTT---TTTGTGATTGAATT 428 Query 355613 AAATACCTTCTTCCTCTGAACCATACAATACTTTTCTTTGAGATGGTTTAAGACCGTCAG 355672 |||| | || | || | | | |||||||||||| |||||||| ||| || Sbjct 427 AAATTATATTTTAAAC--AAATAAAAATTACTTTTCTTTGTCCTGGTTTAAAACCATCTA 370 Query 355673 CTATGTTAGGTATTGATCTCATATTATCATCGACTGAAAATGAAATAAGTTCGCGATGAA 355732 || ||| || ||| |||||||| | | ||||| ||| | ||| || || Sbjct 369 TTAAAGAAGGAATACTTCTAATATTATCTGCCATAGAAAAAAGAATTAATTCTTTATTAA 310 Query 355733 TAAAATC--ATAATATGATACGCGTTTTTGT-GAATTATCAATATAATTATTAGGATTAT 355789 ||||||| || | | ||| || | | |||| ||| | | || ||||||||||| Sbjct 309 TAAAATCTGTTATTTTTATA---TTTCTAATAGAATGATCTAAAAAAGTATTAGGATTAC 253 Query 355790 AAGTATTTATCCAAAGTTTTCTATCATCT 355818 || | |||| ||| | ||||||||||||| Sbjct 252 AATTTTTTAACCATAATTTTCTATCATCT 224 >seq188 Length=831 Score = 127 bits (140), Expect = 1e-23 Identities = 273/400 (68%), Gaps = 26/400 (7%) Strand=Plus/Plus Query 356217 AAATCCTTCATATTTAGCTAATGAA---GGCCAAAAACGATGAATTAAATTCATTATTAA 356273 ||||||||| ||||| |||| || || || || | | || ||||| || | ||| Sbjct 76 AAATCCTTC-TATTTT--TAATAAACTTGGAAAATAATGTTCAAAAAAATTTATAAGTAA 132 Query 356274 TCCTTTAATATGATATCCATCAACGTCTTGATCTGCTAAAATCATAATACTACCATACCT 356333 |||||| ||||| |||||||| |||||||||| | || || | | ||||| || Sbjct 133 TCCTTTTATATGTGATCCATCATAATCTTGATCTGTCATTATTATTACTGTTCCATATCT 192 Query 356334 AAGTTCTTTAAGATCATTATATACTTTTCCTTGCTCTAAACCAACAAttttttttATAGC 356393 | | || | | |||| |||||| || | ||| || | || ||||||| | Sbjct 193 TAATGTTTCTACTGTTTCATATTTTTTTCCATGTTGTAATCCTATTATCTTTTTTAAATT 252 Query 356394 AGTTATTTCTTCATTACTTGCGACAATTGCTGGACTTTTGGT-----TCTTACATTTAGT 356448 | ||| ||||||||| || | | || | | | || | ||||||||||| | Sbjct 253 ATTTAATTCTTCATT--TTTCATTATTTTTT---CATGTGATGCATCTCTTACATTTATT 307 Query 356449 GGTTTTCCTTTTAATGGGAAAATACCATAATAATCTCTTCCGACAAC-----ATTTAAT- 356502 ||||||||||||||| || ||| || || |||||| | ||| ||| Sbjct 308 AATTTTCCTTTTAATGGAAATGCTCCAAAAATATTTCTTCCTTCTTTTATTGATTCAATT 367 Query 356503 CCAGACATAGCAAATGCTTTAGCTGAATCTCCTTCAGTAAGAATTAAAGT--ACATTTAT 356560 ||| |||| ||||||| |||||||||||||||||| || | || ||||| |||||| | Sbjct 368 CCACACATTGCAAATGTTTTAGCTGAATCTCCTTCTGTTAAAA--AAAGTGAACATTTTT 425 Query 356561 ATCCTTCTTTTGTTCCAGCTTTATGAGCATTATATAATTT 356600 | ||||||||||| ||||||| |||| || |||||| Sbjct 426 TTGAATCTTTTGTTCCTGCTTTATTTGCATCATCTAATTT 465 >seq210 Length=3012 Score = 116 bits (128), Expect = 2e-20 Identities = 334/498 (67%), Gaps = 38/498 (8%) Strand=Plus/Plus Query 361418 TTTGTATGTATTTCAAAAATCTTGATGCGACCTTCTTTAGAAGGTAAATCAATTTTAATA 361477 |||||||| ||||| ||||| | | | | | | || |||| |||||| |||| Sbjct 1696 TTTGTATGAATTTCTAAAATTTCTTTTCTATCAAGTAATGATGGTAGTCCAATTTCAATA 1755 Query 361478 TGAATTCCAAATCTTCCTGATCTTTTTACTGCTGGATCTAATAATTCTAATCTATTTGTT 361537 |||||| |||| || |||| |||| | |||| ||| ||||| || | | |||||| Sbjct 1756 TGAATTTCAAACCTACCTGGTCTTAAAAGTGCTTCATCCAATAAATCAATACGATTTGTC 1815 Query 361538 ATACCGATACAAATAAAATTATT-AAATTGTTCTAAACCATCCATTTCTGCTAAAAATTG 361596 || || ||| | || |||||| ||| | || | |||||| |||| || || ||||| Sbjct 1816 ATTCCAATAATTAAAATATTATTTAAACTATTA-ACACCATCTATTTTTGACAATAATTG 1874 Query 361597 ATTTACAACAGAATCTCTTACTGGACTTGAACTATTACCTTCTCTTGAAGGTAACATGGC 361656 |||||||| |||| | | | |||||||| ||| |||| | || || Sbjct 1875 ATTTACAATTTGATCTGTAAAATTGTTAGAACTATT-TCTTTTCTT-----ACAAATTGC 1928 Query 361657 ATCAATTTCATCAATTACTACCAT-ATATGTAGG------AGATTTATCGCCATATTTTT 361709 ||| |||||||||| || || || ||||| ||| |||||| || ||||| Sbjct 1929 ATCTATTTCATCAAATA-TA--ATGATATGAAGGTTTGAAAGATTT----CC---TTTTT 1978 Query 361710 TCCATGCATC---TTTAGCGGCTTTAAAAATATCTCTAACATTTGATTCAGATTCTCCAA 361766 || || ||| || ||| ||||||| | || | || |||| |||||||| |||| Sbjct 1979 TC--TG-ATCTAATTCAGCATCTTTAAACAATTCACGAATATTTTCTTCAGATTGACCAA 2035 Query 361767 CGTATTTATTAAAAATTTCTGGTCCTGACATTAATCTAAATTGATCACCTTCACAACCAA 361826 | |||||||| | ||||||||||| |||| | | | || | || | || Sbjct 2036 CATATTTATTGAGAATTTCTGGTC----CATTTA-CAACTTTTGGTTCTTTTGCGTTTAA 2090 Query 361827 GTAATTTTCCTAAATTACGTGCAACTGATGTTTTTCCTGTCCCAGGAGGACCATAGAAAA 361886 ||||| || | | | ||||| | | ||||| || || ||||| || ||||| |||| Sbjct 2091 -CAATTTACCAATTTGTCTTGCAATTAAAGTTTTACCAGTACCAGGTGGTCCATATAAAA 2149 Query 361887 TAATACCTTTTAC-TGGT 361903 | |||||| |||| |||| Sbjct 2150 TTATACCTCTTACATGGT 2167 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268110439552244