Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudoloma_20neurophilia_20[genbank_20GCA_5F001432165.1_202015-11-
05] 1,603 sequences; 5,248,409 total letters
Query= NC_020842.1
Length=79114
Score E
Sequences producing significant alignments: (Bits) Value
seq1321 150 9e-32
>seq1321
Length=4813
Score = 150 bits (166), Expect = 9e-32
Identities = 558/855 (65%), Gaps = 36/855 (4%)
Strand=Plus/Plus
Query 24651 TTTCTTTTTCTAATGTAAATTGCTTAGCTGATACTGCTGGTTTAGTTCTAAGATAATACA 24710
||||||| || | |||||||| || || | |||||| || || | ||| ||||
Sbjct 2069 TTTCTTTATCAACAGTAAATTGAACGGCCGAGGCAATTGGTTTGGTCCTTAAATAGTACA 2128
Query 24711 TTCCAGTTTTCAATTTCTTCTTCCAACCGTAAAAATGCATTGATGTTAGTTTT-GCAATG 24769
|||| ||||| |||||||| |||||| |||||| ||||| || || | |||| | |||
Sbjct 2129 TTCCGGTTTTTAATTTCTTTTTCCAAGAGTAAAAGTGCATCGAAGTGATTTTTTGGTATG 2188
Query 24770 TTTGCTGATTCTAAAAACAAGTTCATCGATTGAGCTTGGCAAACAAAACGTTGTCTATCT 24829
|| | || | | | ||||| ||||| || || | || || ||| ||||||||||
Sbjct 2189 TTGG-TGTTGCCACAAACATGTTCAAAGACTGTGACTGATCAATAAATGGTTGTCTATCA 2247
Query 24830 GCAGCTAAGTCAATGATCGTTTTCATCGATATATCGTAAGCTGTTTTGTATCTCTCTTTT 24889
| | | || || | | ||||||||||| || || ||||||||| | |||
Sbjct 2248 GATGAAAGATCGATCAAAGATTTCATCGATAATTCCCAACTGGTTTTGTATAATTGTTTA 2307
Query 24890 ATCTCAGTTGGAATACTTGCAATATTTTGAACTGATCCATTTT-CTCT----CAATAGAT 24944
| | | ||||| || || ||||| | || || |||| |||| |||| |
Sbjct 2308 AGGTTTTTAGGAATGGATGTGATTTTTTGGATGGAGCCCTTTTGCTCTATAAGAATATTT 2367
Query 24945 TCAATCTCATATTCGGTGTCCAAAGA-TTAATTTTTTCAAGATCTCTAATCAAGTGTTTA 25003
| ||||||| | |||| ||| ||||| | | |||||| | | || | |||
Sbjct 2368 TTCATCTCATCAT-----TCCATAGACCTAATTGTAT-GAGATCTTTTAGTAAATATTTG 2421
Query 25004 TTTATGATAATAAATTCTCCAGACAAAACTCTTCTTATTGATAAGTTTGAAGTGAATGGT 25063
|||||||| ||| ||||| | | |||||| | || || || || ||||||
Sbjct 2422 TTTATGATCTGAAAATCTCCTGCAAGCGTTCTTCTGGCGTAGAAATTGGATGTAAATGGT 2481
Query 25064 TCAAAACATTCATTATTTCCTAAGATTTGAGAAGTAGATGCTGTTGGCATTAATGCTATT 25123
|||||||| |||||| ||| | || || || ||| |||||||||||||| | |
Sbjct 2482 TCAAAACACTCATTAAATCCCATAATCTGTGATGTACTTGCTGTTGGCATTAGAGAAGTG 2541
Query 25124 A--ATAGCGAATTTCTCAAACCATATTTAACAATCTCTTGTTTTAATTTATCCCAATCTA 25181
| ||| | ||||||| |||||| || || || | | | | | || |||||| |
Sbjct 2542 AGCATACTG--TTTCTCAGACCATAATTTACGATATTTCTTCTCAGATTTGACCAATCAA 2599
Query 25182 A-ATTATTATCTAACTCGATATCGTTATCATATAAATCAAATTGTAACAATCCACTTGCT 25240
| | |||| | || || | || || |||||||| ||||| | || ||| |
Sbjct 2600 ACGGTGTTAT-TGGCTTGACACCG------TAAAAATCAAAATGTAAAATCCCTTTTGAT 2652
Query 25241 GCAGGCGATTGATCAAAAGTTGAATAT-TTACCTTTTGTTATTGCCATATCTTTTGATTG 25299
||||| ||| ||||| | |||||| | | | ||||| |||||| | ||||
Sbjct 2653 GCAGGAGATCCTTCAAATGACGAATATGGTCCGTATTGTT-TTGCCAATTTGCAAGATTC 2711
Query 25300 CTCTAACGCAGCATAATACATATTTTCAAAAATCGCTTTGTTTAAAAACTTAGCTTTTTC 25359
|| | |||||| | | || ||||||||||| |||||| | ||||| ||
Sbjct 2712 TTCAAGTGCAGCAAATTGAATCGTTTCAAAAATCAATTTGTTCAGTTCTCGTGCTTTATC 2771
Query 25360 TCCATCGAA-AGCAATTT--CCATTAAGGCGAACGTATCTGCTAATCCCTGAACTCCTAA 25416
||| || ||||| | ||||| | || |||||| | || || | |||||
Sbjct 2772 AGAATCAAATGGCAATCTAAGCATTA---CAAAAAGATCTGCCAGGCCTTGTATGCCTAA 2828
Query 25417 TCCAACTGGACGATGTTTATTATTACT-TATCTCAGTTTCTGATGTTGGATAGAAATTTG 25475
|||| ||| | |||||| |||||| | ||| | || ||| |||||| ||||
Sbjct 2829 ACCAAGTGGTCTATGTTTGAAATTACTGTTTCT-TGCTTGTGACAATGGATAAGCATTTA 2887
Query 25476 TATCGATCACATTAT 25490
||||||| | ||||
Sbjct 2888 TATCGATGATTTTAT 2902
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 253035056468225
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |