Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoloma_20neurophilia_20[genbank_20GCA_5F001432165.1_202015-11- 05] 1,603 sequences; 5,248,409 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq1321 150 9e-32 >seq1321 Length=4813 Score = 150 bits (166), Expect = 9e-32 Identities = 558/855 (65%), Gaps = 36/855 (4%) Strand=Plus/Plus Query 24651 TTTCTTTTTCTAATGTAAATTGCTTAGCTGATACTGCTGGTTTAGTTCTAAGATAATACA 24710 ||||||| || | |||||||| || || | |||||| || || | ||| |||| Sbjct 2069 TTTCTTTATCAACAGTAAATTGAACGGCCGAGGCAATTGGTTTGGTCCTTAAATAGTACA 2128 Query 24711 TTCCAGTTTTCAATTTCTTCTTCCAACCGTAAAAATGCATTGATGTTAGTTTT-GCAATG 24769 |||| ||||| |||||||| |||||| |||||| ||||| || || | |||| | ||| Sbjct 2129 TTCCGGTTTTTAATTTCTTTTTCCAAGAGTAAAAGTGCATCGAAGTGATTTTTTGGTATG 2188 Query 24770 TTTGCTGATTCTAAAAACAAGTTCATCGATTGAGCTTGGCAAACAAAACGTTGTCTATCT 24829 || | || | | | ||||| ||||| || || | || || ||| |||||||||| Sbjct 2189 TTGG-TGTTGCCACAAACATGTTCAAAGACTGTGACTGATCAATAAATGGTTGTCTATCA 2247 Query 24830 GCAGCTAAGTCAATGATCGTTTTCATCGATATATCGTAAGCTGTTTTGTATCTCTCTTTT 24889 | | | || || | | ||||||||||| || || ||||||||| | ||| Sbjct 2248 GATGAAAGATCGATCAAAGATTTCATCGATAATTCCCAACTGGTTTTGTATAATTGTTTA 2307 Query 24890 ATCTCAGTTGGAATACTTGCAATATTTTGAACTGATCCATTTT-CTCT----CAATAGAT 24944 | | | ||||| || || ||||| | || || |||| |||| |||| | Sbjct 2308 AGGTTTTTAGGAATGGATGTGATTTTTTGGATGGAGCCCTTTTGCTCTATAAGAATATTT 2367 Query 24945 TCAATCTCATATTCGGTGTCCAAAGA-TTAATTTTTTCAAGATCTCTAATCAAGTGTTTA 25003 | ||||||| | |||| ||| ||||| | | |||||| | | || | ||| Sbjct 2368 TTCATCTCATCAT-----TCCATAGACCTAATTGTAT-GAGATCTTTTAGTAAATATTTG 2421 Query 25004 TTTATGATAATAAATTCTCCAGACAAAACTCTTCTTATTGATAAGTTTGAAGTGAATGGT 25063 |||||||| ||| ||||| | | |||||| | || || || || |||||| Sbjct 2422 TTTATGATCTGAAAATCTCCTGCAAGCGTTCTTCTGGCGTAGAAATTGGATGTAAATGGT 2481 Query 25064 TCAAAACATTCATTATTTCCTAAGATTTGAGAAGTAGATGCTGTTGGCATTAATGCTATT 25123 |||||||| |||||| ||| | || || || ||| |||||||||||||| | | Sbjct 2482 TCAAAACACTCATTAAATCCCATAATCTGTGATGTACTTGCTGTTGGCATTAGAGAAGTG 2541 Query 25124 A--ATAGCGAATTTCTCAAACCATATTTAACAATCTCTTGTTTTAATTTATCCCAATCTA 25181 | ||| | ||||||| |||||| || || || | | | | | || |||||| | Sbjct 2542 AGCATACTG--TTTCTCAGACCATAATTTACGATATTTCTTCTCAGATTTGACCAATCAA 2599 Query 25182 A-ATTATTATCTAACTCGATATCGTTATCATATAAATCAAATTGTAACAATCCACTTGCT 25240 | | |||| | || || | || || |||||||| ||||| | || ||| | Sbjct 2600 ACGGTGTTAT-TGGCTTGACACCG------TAAAAATCAAAATGTAAAATCCCTTTTGAT 2652 Query 25241 GCAGGCGATTGATCAAAAGTTGAATAT-TTACCTTTTGTTATTGCCATATCTTTTGATTG 25299 ||||| ||| ||||| | |||||| | | | ||||| |||||| | |||| Sbjct 2653 GCAGGAGATCCTTCAAATGACGAATATGGTCCGTATTGTT-TTGCCAATTTGCAAGATTC 2711 Query 25300 CTCTAACGCAGCATAATACATATTTTCAAAAATCGCTTTGTTTAAAAACTTAGCTTTTTC 25359 || | |||||| | | || ||||||||||| |||||| | ||||| || Sbjct 2712 TTCAAGTGCAGCAAATTGAATCGTTTCAAAAATCAATTTGTTCAGTTCTCGTGCTTTATC 2771 Query 25360 TCCATCGAA-AGCAATTT--CCATTAAGGCGAACGTATCTGCTAATCCCTGAACTCCTAA 25416 ||| || ||||| | ||||| | || |||||| | || || | ||||| Sbjct 2772 AGAATCAAATGGCAATCTAAGCATTA---CAAAAAGATCTGCCAGGCCTTGTATGCCTAA 2828 Query 25417 TCCAACTGGACGATGTTTATTATTACT-TATCTCAGTTTCTGATGTTGGATAGAAATTTG 25475 |||| ||| | |||||| |||||| | ||| | || ||| |||||| |||| Sbjct 2829 ACCAAGTGGTCTATGTTTGAAATTACTGTTTCT-TGCTTGTGACAATGGATAAGCATTTA 2887 Query 25476 TATCGATCACATTAT 25490 ||||||| | |||| Sbjct 2888 TATCGATGATTTTAT 2902 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253035056468225