Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoloma_20neurophilia_20[genbank_20GCA_5F001432165.1_202015-11- 05] 1,603 sequences; 5,248,409 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq495 244 2e-59 seq41 179 5e-40 >seq495 Length=2372 Score = 244 bits (270), Expect = 2e-59 Identities = 572/854 (67%), Gaps = 16/854 (2%) Strand=Plus/Plus Query 17884 TTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATATTAAATTCATAAAATCAAATGGATT 17943 |||||| || || || || || |||| ||||| || | ||| ||||||||||| || Sbjct 298 TTTCTCAAAAAAGTTGGTTTTACCTTGTAATGAAATATTTTCCATGAAATCAAATGGGTT 357 Query 17944 AGTGGTTTTATAATATTTTTCTTGTATTAAT-TCGTATAATAATCTATCTGCTACAAATT 18002 | || |||||| ||||| | || || || | ||| | | ||||||||| |||| Sbjct 358 GTTCGTATTATAAACTTTTT-TACAATCAAAATCTTGTAAGATGCCATCTGCTACGAATT 416 Query 18003 CGACATATTGTGACATCAAATCGCAATTCATACCTAGTAGTCTGAAAGGTAGAGCATCAA 18062 | ||||||| |||| ||| ||||||||||||| ||| || ||| | | | || Sbjct 417 CTACATATTTGCACATGGAATTACAATTCATACCTATAAGTGAGACAGGCAATGAAACAT 476 Query 18063 TAATAAATTCTTTCTCTATCTCAACAGACTCTTTTATTATGTTTATTACCCTAGATTTTG 18122 ||| ||| || |||||||| || || | || | | || | | | || | ||| Sbjct 477 TAACAAACTCCTTCTCTATTTCTACTGCTTCCATCACAATTTGTTTGACTATCTCTTT-- 534 Query 18123 GCAATTTA--TTAATTATGTGATTATAATATAATAAACACGCAAAATCAGTG-TGTAAAC 18179 ||||| ||| || | ||| | | || |||| ||| |||| || ||||| | Sbjct 535 ---ATTTACCTTATTTTTAAGATATGAGTGTATTAAA-ACGGCAAATTTGTAATGTAAGC 590 Query 18180 CTTCATCTCTGGATATTAATTCGTTACTAAACGTTAACCCGGGCATTATACCTCtttttt 18239 | ||||||| ||||| | || || ||| || | || ||||| | |||||||| | Sbjct 591 CCTCATCTCGTGATATGAGCTCATTTGAAAATGTCAGACCAGGCATCTTGCCTCTTTTCT 650 Query 18240 ttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAATATACCCTCAACGCACGCGAACG 18299 ||| ||| || || ||||| || | || || || | ||| || || || || || | Sbjct 651 TTAACCAGAAGATGGATGCAAAGGAAGAGGAGAAAAAAAGACCTTCTACACATGCAAATG 710 Query 18300 CTATTAATCTTTCAGCAAAACTGTATTTATTGCTCAGTATCCATTTTTGTGCCCA-TTCT 18358 |||| ||||| || | | | ||| | ||| |||||||| ||| || Sbjct 711 CTATCAATCTGATAGAATAGTCCTCTTTTGAG-TCA--ATCCATTTGAAACACCAATTAG 767 Query 18359 CCTTNNNNNNNNATACACGGTATACTCTCTATAGCATTAAACAAATCATCTTTTTCTTTG 18418 |||| || | || ||| | | || || ||||||| | | ||||| || | Sbjct 768 CCTTTTTCTCA-ATTGATGGAATATTTTTGATTGCGTTAAACAGAAAGTGTTTTTGTTCG 826 Query 18419 GAATCTTTTATATAAGTGTCGATTAACAAAGAATACATTTCAGAATGTATGCTTTCCATA 18478 |||||| ||||||||||| ||||||||||| ||||| |||||||| ||| |||| || Sbjct 827 TTATCTTTAATATAAGTGTCAATTAACAAAGAGTACATCTCAGAATGGATGTTTTCTATC 886 Query 18479 GCTATCTGAAAACTATAAAACGATCTAGCCTCGGGATATTGAATCTCGCTATAAAATCTT 18538 ||||| || | ||||| || | || || | ||||| || || |||||||| Sbjct 887 ATAATCTGGAATCCGTAAAAACATTTTGCTTCTTTAAGCTGAATTTCTCTTGAAAATCTT 946 Query 18539 TCTACCAAATTCTCATTAACTATACCGTCAGCAGATGCGAAAAATGCCAAAACATATTTA 18598 |||| ||||| ||||| || || |||||| | ||||||||||| | ||||| | Sbjct 947 TCTAATAAATTTTCATTTACGATTCCGTCACTTGCAGCGAAAAATGCAAGAACATTTGAT 1006 Query 18599 ATGAAATGTTTTTCATTATCCTTGAGATTGTTCCATTCATCTATATCTTTTGATAGATCA 18658 ||||||| || ||| | || || | | || | |||| | ||| ||| |||||| Sbjct 1007 ATGAAATATTGCTCACTTTCTTTTAAAGAATTAAAATCATTCAAATCACGTGAAAGATCA 1066 Query 18659 ACTTCTTCCGATGTCCAAAAAGATGATTCGGCCTGTTTGTACATTTTATAAATATCTTCA 18718 |||||||| |||||| ||||| || | || || || ||||||| ||||||| | Sbjct 1067 ACTTCTTCAACTGTCCAGAAAGAGGAAACCGCATGCTTATACATTTGCCAAATATCATGG 1126 Query 18719 TGTTGTATAGGAAA 18732 |||| ||| ||||| Sbjct 1127 TGTTCTATTGGAAA 1140 >seq41 Length=3466 Score = 179 bits (198), Expect = 5e-40 Identities = 195/256 (76%), Gaps = 2/256 (1%) Strand=Plus/Plus Query 155810 TTTATGTAATAAA-ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAG 155868 ||||| || |||| |||||||| ||| |||||||||| || || |||||||| ||||| | Sbjct 2960 TTTAT-TATTAAAGATGCAAATTTTTGTTAAAACATTAACAGGTAAAACTATAACATTGG 3018 Query 155869 AAGTCGAAGATTCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCA 155928 |||| ||| |||||| ||| ||| || ||| ||||| |||||||||||||| | Sbjct 3019 AAGTTGAACCATCTGATTCAATTGAAAATGTAAAAGCAAAAATTCAAGATAAAGAAGGTA 3078 Query 155929 TACCTCCAGAACAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTT 155988 | || || || ||||||||||| || | ||| ||||| || | |||||| ||||| | Sbjct 3079 TTCCACCTGATCAACAAAGATTAATATTTGCAGGTAAACAATTAGAAGATGGAAGAACAT 3138 Query 155989 TATCAGATTATAATATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCG 156048 || ||||||||||||| ||||| || | |||||||| |||||||||||||| | Sbjct 3139 TAGCAGATTATAATATTCAAAAAGAAAGTACTTTACATTTAGTTTTAAGATTAAGAGGTG 3198 Query 156049 GTGTAAAATTGAATAA 156064 || |||| ||| || Sbjct 3199 GTAAAAAAAAGAAAAA 3214 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731857335114800