Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoloma_20neurophilia_20[genbank_20GCA_5F001432165.1_202015-11- 05] 1,603 sequences; 5,248,409 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq41 214 4e-50 seq495 176 9e-39 >seq41 Length=3466 Score = 214 bits (236), Expect = 4e-50 Identities = 194/243 (80%), Gaps = 1/243 (0%) Strand=Plus/Minus Query 192308 TACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAG 192367 |||||||||| | | ||| ||||||||||||||| ||||| ||||||||||| | Sbjct 3201 TACCACCTCTTAATCTTAAAACTAAATGTAAAGTACTTTCTTTTTGAATATTATAATCTG 3142 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 |||||||| | |||| || ||||||||||| ||||| |||||||| ||||||||||||| Sbjct 3141 CTAATGTTCTTCCATCTTCTAATTGTTTACCTGCAAATATTAATCTTTGTTGATCAGGTG 3082 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487 | || |||||||||||||| ||||| ||||||||| || ||||| || | ||| | Sbjct 3081 GAATACCTTCTTTATCTTGAATTTTTGCTTTTACATTTTCAATTGAATCAGATGGTTCAA 3022 Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT-TTTATTAGAA 192546 |||| | || || |||||||| ||||||||||||| ||| || ||||| |||| || | Sbjct 3021 CTTCCAATGTTATAGTTTTACCTGTTAATGTTTTAACAAAAATTTGCATCTTTAATAATA 2962 Query 192547 AAA 192549 ||| Sbjct 2961 AAA 2959 >seq495 Length=2372 Score = 176 bits (194), Expect = 9e-39 Identities = 545/836 (65%), Gaps = 20/836 (2%) Strand=Plus/Plus Query 49573 CTTCTAATGATATTAAATTCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTC 49632 ||| |||||| || | ||| ||||||||||| || || ||||||||| ||||| | Sbjct 321 CTTGTAATGAAATATTTTCCATGAAATCAAATGGGTTGTTCGTATTATAAACTTTTT-TA 379 Query 49633 CTATCAATA-CATATAATAATCTATCGGCTACAAATTCAACATATTGTGACATTAATTCA 49691 | ||||| | | | ||| | | ||| ||||| ||||| ||||||| |||| | | | Sbjct 380 CAATCAAAATCTTGTAAGATGCCATCTGCTACGAATTCTACATATTTGCACATGGAATTA 439 Query 49692 CAATTCATACCCAATAATTTA-AATGGTAATGCATCATCAATAAATTCtttttctatttc 49750 ||||||||| || |||| | | | || |||| | ||| || ||| || || |||||||| Sbjct 440 CAATTCATA-CCTATAAGTGAGACAGGCAATGAAACATTAACAAACTCCTTCTCTATTTC 498 Query 49751 tacagcttgtttaattatcataattatattattttttga--taatttatatttaatatga 49808 ||| |||| | | || | || | ||| | || | || |||| ||||| || Sbjct 499 TACTGCTTCCATCACAAT--TTGTTTGACTATCTCTTTATTTACCTTATTTTTAA---GA 553 Query 49809 ttcgcatatattaaACATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCA 49868 | | | ||||||| ||||| | |||||| ||||| || | ||||| | ||| Sbjct 554 TATGAGTGTATTAAAACGGCAAATTTGTAATGTAAGCCCTCATCTCGTGATATGAGCTCA 613 Query 49869 TTACTAAAAGTTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAA 49928 || ||| || | || ||||| ||||| || || | ||| || || |||||||| Sbjct 614 TTTGAAAATGTCAGACCAGGCATCTTGCCTCTTTTCTTTAACCAGAAGATGGATGCAAAG 673 Query 49929 CTACTAGAAAAGAATATACCCTCGACACACGCAAATGCTATTATTCTTGCTCCAAACATT 49988 | || || || | ||| || ||||| ||||||||||| | || || | || | Sbjct 674 GAAGAGGAGAAAAAAAGACCTTCTACACATGCAAATGCTATCAATC-TGATAGAATAGTC 732 Query 49989 AATTTATCATCTAATATCCAATTTATAGCCCAATCTGCtttttttttGATAGAAGGTATA 50048 || | | | ||||| || | | ||||| || ||||| | || || || ||| Sbjct 733 CTCTTTTGAGTCA--ATCCATTTGAAACACCAATTAGCCTTTTTCTCAATTGATGGAATA 790 Query 50049 TTTTCTATAGCTTTAAATAATTCAtttttttCATNNNNNNNNNNNNNNNNNNNNNNNATT 50108 |||| || || ||||| | | ||||| | ||| Sbjct 791 TTTTTGATTGCGTTAAACAGAAAGTGTTTTTGTTCGTTATCTTTAATATAAGTGTCAATT 850 Query 50109 AATAAAGAATACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGT 50168 || ||||| ||||| |||||||| | ||| || || || ||| ||||| | Sbjct 851 AACAAAGAGTACATCTCAGAATGGATGTTTTCTATCATAATCTGGAATCCGTAAAAACAT 910 Query 50169 CTTGCTTCTGAATACTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATA 50228 |||||||| | ||||| ||| | |||| ||| | |||||| ||| ||| || Sbjct 911 TTTGCTTCTTTAAGCTGAATTTCTCTTGAAAATCTTTCTAATAAATTTTCATTTACGATT 970 Query 50229 CCATCAGATGCTGCGAAGAATGCTAAAACGTATTTAATA--AAATGTTTTTCATTATCTT 50286 || ||| ||| ||||| ||||| | ||| |||| ||| |||| || ||| | |||| Sbjct 971 CCGTCACTTGCAGCGAAAAATGCAAGAAC--ATTTGATATGAAATATTGCTCACTTTCTT 1028 Query 50287 TTAAA-TTTTCCCAAGATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAAT 50345 ||||| || | |||||| ||| ||| | ||| |||||||| | |||||| || Sbjct 1029 TTAAAGAATTAAAATCATTCAA-ATCACGTGAAAGATCAACTTCTTCAACTGTCCAGAAA 1087 Query 50346 GATGCTACGGATTTTTTATACATTTGATATATATCAAAATGTTCAATGGGAAATAG 50401 || | || | | ||||||||||| | |||||| ||||| || ||||| || Sbjct 1088 GAGGAAACCGCATGCTTATACATTTGCCAAATATCATGGTGTTCTATTGGAAAAAG 1143 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984459780319050