Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoloma_20neurophilia_20[genbank_20GCA_5F001432165.1_202015-11- 05] 1,603 sequences; 5,248,409 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq41 201 2e-46 seq495 158 2e-33 >seq41 Length=3466 Score = 201 bits (222), Expect = 2e-46 Identities = 191/243 (79%), Gaps = 2/243 (1%) Strand=Plus/Minus Query 171841 TACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTG 171900 |||||||||| | || ||| ||||||||||||||| ||||| |||||||||||||| Sbjct 3201 TACCACCTCTTAATCTTAAAACTAAATGTAAAGTACTTTCTTTTTGAATATTATAATCTG 3142 Query 171901 ATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTG 171960 ||| | || | | || || ||||||||||| ||||| |||||||| ||||| ||||||| Sbjct 3141 CTAATGTTCTTCCATCTTCTAATTGTTTACCTGCAAATATTAATCTTTGTTGATCAGGTG 3082 Query 171961 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTA 172020 | || |||||||||||||| ||||| ||||||||| || | ||| || | ||| | Sbjct 3081 GAATACCTTCTTTATCTTGAATTTTTGCTTTTACATTTTCAATTGAATCAGATGGTTCAA 3022 Query 172021 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCA--TTTTATTATA 172078 |||| | || || |||||||| ||||||||||||| || || |||| ||| || ||| Sbjct 3021 CTTCCAATGTTATAGTTTTACCTGTTAATGTTTTAACAAAAATTTGCATCTTTAATAATA 2962 Query 172079 AAA 172081 ||| Sbjct 2961 AAA 2959 >seq495 Length=2372 Score = 158 bits (174), Expect = 2e-33 Identities = 561/876 (64%), Gaps = 18/876 (2%) Strand=Plus/Plus Query 38831 TTTTTGGTATTCAGAAACttttttttCGAAAAAGTTTGTTTTTCCTTCTAATGATATTAA 38890 |||||| |||||||| || ||| || |||||||| ||||| |||| |||||| || Sbjct 277 TTTTTGATATTCAGATACACGTTTCTCAAAAAAGTTGGTTTTACCTTGTAATGAAATATT 336 Query 38891 ATTCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTCCTATCAATA-CATATA 38949 | ||| ||||||||||| || || ||||||||| | |||| | | ||||| | | | || Sbjct 337 TTCCATGAAATCAAATGGGTTGTTCGTATTATAA-ACTTTTTTACAATCAAAATCTTGTA 395 Query 38950 ATAATCTATCGGCCACAAATTCAACATATTGTAACATTAATTCACAATTCATACCCAATA 39009 | | | ||| || || ||||| ||||||| |||| | | |||||||||| || ||| Sbjct 396 AGATGCCATCTGCTACGAATTCTACATATTTGCACATGGAATTACAATTCATA-CCTATA 454 Query 39010 ATTTA-AATGGTAATGCATCATCAATAAATTCtttttctatttctacagcttgtttaatt 39068 | | | | || |||| | ||| || ||| || || ||||||||||| |||| | | Sbjct 455 AGTGAGACAGGCAATGAAACATTAACAAACTCCTTCTCTATTTCTACTGCTTCCATCACA 514 Query 39069 atcataattatattattttttga--taatttatatttaatatgattcgcatataGTAAAC 39126 || | || | ||| | || | || |||| ||||| ||| | | || |||| Sbjct 515 AT--TTGTTTGACTATCTCTTTATTTACCTTATTTTTAA---GATATGAGTGTATTAAAA 569 Query 39127 ATGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATC 39186 ||||| | |||||| || || || | ||||| | ||||| ||| || | | Sbjct 570 CGGCAAATTTGTAATGTAAGCCCTCATCTCGTGATATGAGCTCATTTGAAAATGTCAGAC 629 Query 39187 CTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATA 39246 | ||||| ||||| || || | ||| || || |||||||| | || || || | Sbjct 630 CAGGCATCTTGCCTCTTTTCTTTAACCAGAAGATGGATGCAAAGGAAGAGGAGAAAAAAA 689 Query 39247 TACCCTCCACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCA-TCTAAA 39305 ||| || ||||| ||||||||||| | || || | || | || | | || | Sbjct 690 GACCTTCTACACATGCAAATGCTATCAATC-TGATAGAATAGTCCTCTTTTGAGTC---A 745 Query 39306 ATCCAATTTATGGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTA 39365 ||||| || | ||||| || ||||| | || || || ||||||| || || ||| Sbjct 746 ATCCATTTGAAACACCAATTAGCCTTTTTCTCAATTGATGGAATATTTTTGATTGCGTTA 805 Query 39366 AATAATTCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAATACATT 39425 || | | ||| ||||| Sbjct 806 AACAGAAAGTGTTTTTGTTCGTTATCTTTAATATAAGTGTCAATTAACAAAGAGTACATC 865 Query 39426 TCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGCCTTGCTTCTGAATAC 39485 |||||||| | ||| || || || ||| ||||| |||||||| | | Sbjct 866 TCAGAATGGATGTTTTCTATCATAATCTGGAATCCGTAAAAACATTTTGCTTCTTTAAGC 925 Query 39486 TGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGCTGCG 39545 |||| ||| | |||| ||| | |||||| ||| ||| || || ||| ||| ||| Sbjct 926 TGAATTTCTCTTGAAAATCTTTCTAATAAATTTTCATTTACGATTCCGTCACTTGCAGCG 985 Query 39546 AAGAATGCTAAAACATATTTAATAAAATGTTTTTCATTATCTTTTAAA-TTTTCCCAAGA 39604 || ||||| | ||||| | || |||| || ||| | ||||||||| || | | Sbjct 986 AAAAATGCAAGAACATTTGATATGAAATATTGCTCACTTTCTTTTAAAGAATTAAAATCA 1045 Query 39605 TTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAAAGATGCTACGGATTTTTT 39664 ||||| ||| ||| | ||| |||||||| | |||||| ||||| | || | | || Sbjct 1046 TTCAA-ATCACGTGAAAGATCAACTTCTTCAACTGTCCAGAAAGAGGAAACCGCATGCTT 1104 Query 39665 ATACATTTGATATATATCAAAATGTTCAATGGGAAA 39700 ||||||||| | |||||| ||||| || ||||| Sbjct 1105 ATACATTTGCCAAATATCATGGTGTTCTATTGGAAA 1140 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905117863337400