Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoloma_20neurophilia_20[genbank_20GCA_5F001432165.1_202015-11- 05] 1,603 sequences; 5,248,409 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq41 87.8 1e-12 >seq41 Length=3466 Score = 87.8 bits (96), Expect = 1e-12 Identities = 167/245 (68%), Gaps = 1/245 (0%) Strand=Plus/Plus Query 107551 TTAAA-ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG 107609 ||||| |||||||||||||| ||||| |||||||| ||||| || || | ||| || Sbjct 2967 TTAAAGATGCAAATTTTTGTTAAAACATTAACAGGTAAAACTATAACATTGGAAGTTGAA 3026 Query 107610 GCTGGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTG 107669 | ||| | | | | |||||| ||| ||| ||||||||||| | || Sbjct 3027 CCATCTGATTCAATTGAAAATGTAAAAGCAAAAATTCAAGATAAAGAAGGTATTCCACCT 3086 Query 107670 GATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGAC 107729 ||||| || ||| | || | ||| |||||||| | || || | | |||| | || || Sbjct 3087 GATCAACAAAGATTAATATTTGCAGGTAAACAATTAGAAGATGGAAGAACATTAGCAGAT 3146 Query 107730 TACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAAATAAT 107789 || || |||||||| || ||| || || | || || ||||| |||| || || || Sbjct 3147 TATAATATTCAAAAAGAAAGTACTTTACATTTAGTTTTAAGATTAAGAGGTGGTAAAAAA 3206 Query 107790 AAAAA 107794 || || Sbjct 3207 AAGAA 3211 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398869007318467