Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoloma_20neurophilia_20[genbank_20GCA_5F001432165.1_202015-11- 05] 1,603 sequences; 5,248,409 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq188 138 8e-27 >seq188 Length=831 Score = 138 bits (152), Expect = 8e-27 Identities = 298/436 (68%), Gaps = 16/436 (4%) Strand=Plus/Minus Query 400250 AAAAATTATATAATGCTCACAAAGCAGGAACCAAAGAAGGATATAAATGTACCCTAATTT 400309 |||||||| || |||| | ||||||||||| ||||| | | |||||| | || ||| Sbjct 467 AAAAATTAGATGATGCAAATAAAGCAGGAACAAAAGATTCAAAAAAATGTTCACTTTTTT 408 Query 400310 TGACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCTGGCCTT-AAT-GTTA----TTG 400363 | ||||| |||||||||||||||||||| || |||| ||| || ||| || | Sbjct 407 TAACAGAAGGAGATTCAGCTAAAACATTTGCAATGTGTGGAATTGAATCAATAAAAGAAG 348 Query 400364 GAAGAGATTATTATGGAGTTTTCCCACTTAGAGGAAAACTTTTGAATGTTAGGGATGCTA 400423 ||||| || || ||||| || ||| | | ||||||| | | ||||| || ||||| Sbjct 347 GAAGAAATATTTTTGGAGCATTTCCATTAAAAGGAAAATTAATAAATGTAAGAGATGCAT 288 Query 400424 GTCCTaaaaaaaTTGCCGATAATGAGGAAATTACAGCAATCaaaaaa-aTTGTTGGACTT 400482 | | ||||||| | ||||| | ||||| | | | |||||| || | ||| | Sbjct 287 CACATGAAAAAATAATGAAAAATGAAG-AATTAAATAATTTAAAAAAGATAATAGGATTA 229 Query 400483 GAACAAGGAAAAGTTTATGATGATCTCAAAGGTTTACGATATGGTAGTATTATGATTCTT 400542 |||| |||||| ||||| | || ||| ||||||| | | || || | Sbjct 228 CAACATGGAAAAAAATATGAAACAGTAGAAACATTAAGATATGGAACAGTAATAATAATG 169 Query 400543 GCTGATCAAGATGTTGATGGGTACCATATCAAAGGATTAATCATGAATTTTAT---CCAT 400599 | ||||||||| |||||| | ||||| ||||||||| | || |||||| | ||| Sbjct 168 ACAGATCAAGATTATGATGGATCACATATAAAAGGATTACTTATAAATTTTTTTGAACAT 109 Query 400600 TGTTTTTGGCCATCTCTTGTTAAATA-CGAAGGGTTTATTCAATCATTTGCAACTCCACT 400658 | |||| ||| | || ||||| | ||||| ||| | || |||| ||| ||| | Sbjct 108 TATTTT---CCAAGT-TTATTAAAAATAGAAGGATTTTTAAAAGAATTTATAACACCAAT 53 Query 400659 ATTAAAAGCCACCAAA 400674 | ||||||| || ||| Sbjct 52 AATAAAAGCAACAAAA 37 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740551699474278