Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudoloma_20neurophilia_20[genbank_20GCA_5F001432165.1_202015-11-
05] 1,603 sequences; 5,248,409 total letters
Query= NC_024697.1
Length=370920
Score E
Sequences producing significant alignments: (Bits) Value
seq1509 168 2e-36
seq878 168 2e-36
>seq1509
Length=28330
Score = 168 bits (186), Expect = 2e-36
Identities = 428/629 (68%), Gaps = 43/629 (7%)
Strand=Plus/Minus
Query 304871 GATTATTCAAACAATTTACAATATCATATTGCAACATTAATGGATAATGAAATTGCTGGA 304930
|||||| ||| |||||||||||||||||| || |||||||||||| | |||||
Sbjct 1795 GATTATGAAAATCTTTTACAATATCATATTGCTACTTTAATGGATAATTCTTTACCTGGA 1736
Query 304931 ATTATGCAGGCATCTCAAAGATCTGGCAGACCTTTAAAGGGTAT-TAGGCAACGCATTAA 304989
| || || ||||| | ||| ||||||||||| |||| | |||| | | ||
Sbjct 1735 TTACCACAATCACTTCAAAAAAGTGGTAGACCTTTAAAAAGTATATCTGCAA-GATTAAA 1677
Query 304990 AGGTAAAGAGGGTCGTATTCGAGGTAATCTAATGGGAAAACGTGTTGATTTTAGTGCAAG 305049
||| ||||| || | || |||||||| ||||||||||| | || |||||| |||||
Sbjct 1676 AGGAAAAGAAGGAAGAGTTAGAGGTAATTTAATGGGAAAAAGAGTAGATTTTTCAGCAAG 1617
Query 305050 AAGTGTAATCACACCTGATTCTCAAATTAG-TCTTCATGAATTAGGAGTTCCAATTGAAA 305108
|||||| || | |||||| | | || | | ||| ||| |||||||||| | | |
Sbjct 1616 AAGTGTTATTTCTCCTGATAGTAATATAGGATTATCA-GAAATAGGAGTTCCTTTACATA 1558
Query 305109 TTGCTTTAAAACTAACATTTCCAGAGAAAGTTAACGAGAAAAATATTAAA--CATTTGAG 305166
|||| || | ||||||||||| |||| |||| | | ||||| |||| |
Sbjct 1557 TTGCAAAAATTCATACATTTCCAGAAAAAG-TAACAACTTTTAATTTAAAATCATTACAA 1499
Query 305167 ACGTTGTGTTCTTAATGGA-AATAGCAAGTATCCAGGTGCTCGTGCTGTTATAAAACACA 305225
| || || ||||||| ||| || |||||||| || | ||||| |||
Sbjct 1498 AAAATG-GTAAATAATGGACCATA-TAAATATCCAGGAGC---AAATTTTATA----ACA 1448
Query 305226 AGCAAAAGA-AGACAATATCTTTGAACCATATCGATTTAAAACAATTC--AGTAA-AAT- 305280
|| || ||| ||||| | || ||||| || | ||| | ||| |||
Sbjct 1447 AG-AATAGATGGACAA-----------AAAATAGATTT--AAGATTTCCTAATAATAATA 1402
Query 305281 GCTTGAAATTA--ATGATATTGTTATCAGACATTTGAATGACAATGATTGGGTTCTGTTC 305338
|| | |||| ||| ||| || |||||| ||||| | ||||||| | || ||
Sbjct 1401 TATTAACATTAGGATG-TATAGTAGAAAGACATATGAATAAAAATGATTATATACTTTTT 1343
Query 305339 AATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGTATTAT-- 305396
||||| ||||||||| | ||||||||| ||||||| | |||||| | ||| || ||
Sbjct 1342 AATAGACAACCATCATTACATAAAATGAGTATGATGTCACATAAA--CCAAGAATAATGA 1285
Query 305397 CTGGATTGACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTTTGATG 305456
||| |||||| |||||||| | ||| | || || ||| || ||||||||||
Sbjct 1284 AAGGAAGAACATTTAGATTAAATCTTAGTACAACAACACCATATGGAGCAGATTTTGATG 1225
Query 305457 GAGATGAAATGAATATGCATGTACCTCAA 305485
|||||||||||||| | ||| | || |||
Sbjct 1224 GAGATGAAATGAATTTACATATGCCACAA 1196
>seq878
Length=1850
Score = 168 bits (186), Expect = 2e-36
Identities = 523/792 (66%), Gaps = 34/792 (4%)
Strand=Plus/Plus
Query 167202 AATATTTCAAAAGAGCACCTAAAATCTTTATTAATTATCATTACACCACCAGCATTATCG 167261
||||||| ||| || || ||| || |||| | |||||| | |||| ||||| ||
Sbjct 220 AATATTTGAAATGAACATGTAAGGTCCTTATCTACATTCATTATAGCACCGGCATTGTCA 279
Query 167262 AATTCATTCGCA-TAATTTGGTGCTGAAAATACAGTAACTAATTTACGAT-TGAAAAATA 167319
||||| | | || ||||||||||||||||| ||||| || ||| | ||| || |||| |
Sbjct 280 AATTC-TCCACAATAATTTGGTGCTGAAAAAACAGTTACCAATCTCTGATCTGCAAAA-A 337
Query 167320 ATTCATAACCATCTTCAACAACTTCATGGGCACGTATTACAAGTTC-AACTCCTAttttt 167378
| |||||||| ||||| || |||| ||| || | | ||| || || || || |
Sbjct 338 ACTCATAACCCTCTTCTACCACTTGATGTGCTCTACAAATAAGATCTAAATCTGTTTCAT 397
Query 167379 ttAAGAAAATTAGTTAAAGCACGTAATCCAAAT-TTATAACTACAACCTCTTTCAGATTC 167437
||||| ||||| |||||| || | |||||||| ||||| ||| ||||| ||| |||
Sbjct 398 TTAAG-AAATTTGTTAAAACATCTGATCCAAATGTTATAGATAC-TCCTCTATCATTTTC 455
Query 167438 AGAATAATAATCAATATCATGCGATGGATCCGCCCAAAGAAGATCGCATACCAACCCCTT 167497
| | ||||| | ||||| ||| | | ||| |||| || || |
Sbjct 456 TCCCCATCCTTTAATATTTTTTTCAGGATCACTCCATAATAAATCACATAATAATCCATC 515
Query 167498 ATCAGGGATATCAATAGGTTTTTTAATCCTATTGATATCTTCTA-ATTTATTAATATCTT 167556
|||||| || ||| | ||| | ||| | | || | || | |||| |||| |
Sbjct 516 ATCAGGTATTTCAGTTGGTCTAGAAATATTTTCAATTTGTTTAAGATTTTTTAA-AGAAG 574
Query 167557 CAGTGATTCCACCATGAACACAAAAAGCCAATGGATTATCAATTGTTATTCCAATGGTTG 167616
|| ||||||||||| | ||| || ||| ||||| || ||| | |
Sbjct 575 GAGAAATTCCACCATGCATACATAA----AAT--TCTATCACTTATTA---------TAG 619
Query 167617 CAGCAATAGACATAGTGTCAAAAACATCGATGAAACTTTTCCAGATTTTTATCGAACCAC 167676
||| |||| | | | ||| ||| | ||| |||||| |||||||| | |
Sbjct 620 CAGATATAGGTAAACAATTAAATGTATCAGTAAAATGTTTCCATATTTTTATATTAAATC 679
Query 167677 GTCGTTTGCATTCATCGTAAAAACCATAGTCTCTTGAGATATCAGCACATTCGTGATTTC 167736
|| ||| |||||||| |||| ||||| | | ||| |||| ||| |||||||
Sbjct 680 TTCTTTTACATTCATCAAAAAATCCATAAATTTTATTTATAGAGGCACTTTCATGATTTC 739
Query 167737 CTCTTAATAAAATTATGTTATTTNNNNNNNNNNNNNT-GTAGCAAAATAATAACAAAATT 167795
| ||||||||| || || ||| | ||||||| | ||| |||||
Sbjct 740 CCCTTAATAAATGAATATTTTTTGGATATTTTATTTTAAAAGCAAAA-AGTAAACAAATT 798
Query 167796 GTTTCTAATGATTTAACACCTCTATCAACATAATCACCTAAAAATATATATTTATTTTGG 167855
|||||||| |||| ||| | ||||||||||||||||||||||| | | ||||
Sbjct 799 GTTTCTAAAGATTGTTTACCACGATCAACATAATCACCTAAAAATAAAAA---ATTTGTA 855
Query 167856 TTTGAAGGATTATCTAGTTTTTTAAAAATATTCAATAAATCACTAAATTGACCATGTAAA 167915
|||| ||||| | | || ||| | ||| | | ||| ||| |||| ||||| | |
Sbjct 856 TTTGGAGGATAACCAGCAAATTCAAATAAATTTAGAAGATCTCTATATTGTCCATGGATA 915
Query 167916 TCACCTACA-ACCTTTAT-GGGACTTGTAGTTTTAATTAGCATTGGTTCGCTCATAAATA 167973
||||| ||| | ||||| || ||||| |||||| || ||||| || | ||||||| |
Sbjct 916 TCACC-ACATATTTTTATAGGTGATTGTATTTTTAA-TAACATTGATTGGTTCATAAAAA 973
Query 167974 TTGTTCTTGATT 167985
|| | ||||||
Sbjct 974 TTTCTTTTGATT 985
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1186788424719483
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |