Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoloma_20neurophilia_20[genbank_20GCA_5F001432165.1_202015-11- 05] 1,603 sequences; 5,248,409 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq1509 168 2e-36 seq878 168 2e-36 >seq1509 Length=28330 Score = 168 bits (186), Expect = 2e-36 Identities = 428/629 (68%), Gaps = 43/629 (7%) Strand=Plus/Minus Query 304871 GATTATTCAAACAATTTACAATATCATATTGCAACATTAATGGATAATGAAATTGCTGGA 304930 |||||| ||| |||||||||||||||||| || |||||||||||| | ||||| Sbjct 1795 GATTATGAAAATCTTTTACAATATCATATTGCTACTTTAATGGATAATTCTTTACCTGGA 1736 Query 304931 ATTATGCAGGCATCTCAAAGATCTGGCAGACCTTTAAAGGGTAT-TAGGCAACGCATTAA 304989 | || || ||||| | ||| ||||||||||| |||| | |||| | | || Sbjct 1735 TTACCACAATCACTTCAAAAAAGTGGTAGACCTTTAAAAAGTATATCTGCAA-GATTAAA 1677 Query 304990 AGGTAAAGAGGGTCGTATTCGAGGTAATCTAATGGGAAAACGTGTTGATTTTAGTGCAAG 305049 ||| ||||| || | || |||||||| ||||||||||| | || |||||| ||||| Sbjct 1676 AGGAAAAGAAGGAAGAGTTAGAGGTAATTTAATGGGAAAAAGAGTAGATTTTTCAGCAAG 1617 Query 305050 AAGTGTAATCACACCTGATTCTCAAATTAG-TCTTCATGAATTAGGAGTTCCAATTGAAA 305108 |||||| || | |||||| | | || | | ||| ||| |||||||||| | | | Sbjct 1616 AAGTGTTATTTCTCCTGATAGTAATATAGGATTATCA-GAAATAGGAGTTCCTTTACATA 1558 Query 305109 TTGCTTTAAAACTAACATTTCCAGAGAAAGTTAACGAGAAAAATATTAAA--CATTTGAG 305166 |||| || | ||||||||||| |||| |||| | | ||||| |||| | Sbjct 1557 TTGCAAAAATTCATACATTTCCAGAAAAAG-TAACAACTTTTAATTTAAAATCATTACAA 1499 Query 305167 ACGTTGTGTTCTTAATGGA-AATAGCAAGTATCCAGGTGCTCGTGCTGTTATAAAACACA 305225 | || || ||||||| ||| || |||||||| || | ||||| ||| Sbjct 1498 AAAATG-GTAAATAATGGACCATA-TAAATATCCAGGAGC---AAATTTTATA----ACA 1448 Query 305226 AGCAAAAGA-AGACAATATCTTTGAACCATATCGATTTAAAACAATTC--AGTAA-AAT- 305280 || || ||| ||||| | || ||||| || | ||| | ||| ||| Sbjct 1447 AG-AATAGATGGACAA-----------AAAATAGATTT--AAGATTTCCTAATAATAATA 1402 Query 305281 GCTTGAAATTA--ATGATATTGTTATCAGACATTTGAATGACAATGATTGGGTTCTGTTC 305338 || | |||| ||| ||| || |||||| ||||| | ||||||| | || || Sbjct 1401 TATTAACATTAGGATG-TATAGTAGAAAGACATATGAATAAAAATGATTATATACTTTTT 1343 Query 305339 AATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGTATTAT-- 305396 ||||| ||||||||| | ||||||||| ||||||| | |||||| | ||| || || Sbjct 1342 AATAGACAACCATCATTACATAAAATGAGTATGATGTCACATAAA--CCAAGAATAATGA 1285 Query 305397 CTGGATTGACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTTTGATG 305456 ||| |||||| |||||||| | ||| | || || ||| || |||||||||| Sbjct 1284 AAGGAAGAACATTTAGATTAAATCTTAGTACAACAACACCATATGGAGCAGATTTTGATG 1225 Query 305457 GAGATGAAATGAATATGCATGTACCTCAA 305485 |||||||||||||| | ||| | || ||| Sbjct 1224 GAGATGAAATGAATTTACATATGCCACAA 1196 >seq878 Length=1850 Score = 168 bits (186), Expect = 2e-36 Identities = 523/792 (66%), Gaps = 34/792 (4%) Strand=Plus/Plus Query 167202 AATATTTCAAAAGAGCACCTAAAATCTTTATTAATTATCATTACACCACCAGCATTATCG 167261 ||||||| ||| || || ||| || |||| | |||||| | |||| ||||| || Sbjct 220 AATATTTGAAATGAACATGTAAGGTCCTTATCTACATTCATTATAGCACCGGCATTGTCA 279 Query 167262 AATTCATTCGCA-TAATTTGGTGCTGAAAATACAGTAACTAATTTACGAT-TGAAAAATA 167319 ||||| | | || ||||||||||||||||| ||||| || ||| | ||| || |||| | Sbjct 280 AATTC-TCCACAATAATTTGGTGCTGAAAAAACAGTTACCAATCTCTGATCTGCAAAA-A 337 Query 167320 ATTCATAACCATCTTCAACAACTTCATGGGCACGTATTACAAGTTC-AACTCCTAttttt 167378 | |||||||| ||||| || |||| ||| || | | ||| || || || || | Sbjct 338 ACTCATAACCCTCTTCTACCACTTGATGTGCTCTACAAATAAGATCTAAATCTGTTTCAT 397 Query 167379 ttAAGAAAATTAGTTAAAGCACGTAATCCAAAT-TTATAACTACAACCTCTTTCAGATTC 167437 ||||| ||||| |||||| || | |||||||| ||||| ||| ||||| ||| ||| Sbjct 398 TTAAG-AAATTTGTTAAAACATCTGATCCAAATGTTATAGATAC-TCCTCTATCATTTTC 455 Query 167438 AGAATAATAATCAATATCATGCGATGGATCCGCCCAAAGAAGATCGCATACCAACCCCTT 167497 | | ||||| | ||||| ||| | | ||| |||| || || | Sbjct 456 TCCCCATCCTTTAATATTTTTTTCAGGATCACTCCATAATAAATCACATAATAATCCATC 515 Query 167498 ATCAGGGATATCAATAGGTTTTTTAATCCTATTGATATCTTCTA-ATTTATTAATATCTT 167556 |||||| || ||| | ||| | ||| | | || | || | |||| |||| | Sbjct 516 ATCAGGTATTTCAGTTGGTCTAGAAATATTTTCAATTTGTTTAAGATTTTTTAA-AGAAG 574 Query 167557 CAGTGATTCCACCATGAACACAAAAAGCCAATGGATTATCAATTGTTATTCCAATGGTTG 167616 || ||||||||||| | ||| || ||| ||||| || ||| | | Sbjct 575 GAGAAATTCCACCATGCATACATAA----AAT--TCTATCACTTATTA---------TAG 619 Query 167617 CAGCAATAGACATAGTGTCAAAAACATCGATGAAACTTTTCCAGATTTTTATCGAACCAC 167676 ||| |||| | | | ||| ||| | ||| |||||| |||||||| | | Sbjct 620 CAGATATAGGTAAACAATTAAATGTATCAGTAAAATGTTTCCATATTTTTATATTAAATC 679 Query 167677 GTCGTTTGCATTCATCGTAAAAACCATAGTCTCTTGAGATATCAGCACATTCGTGATTTC 167736 || ||| |||||||| |||| ||||| | | ||| |||| ||| ||||||| Sbjct 680 TTCTTTTACATTCATCAAAAAATCCATAAATTTTATTTATAGAGGCACTTTCATGATTTC 739 Query 167737 CTCTTAATAAAATTATGTTATTTNNNNNNNNNNNNNT-GTAGCAAAATAATAACAAAATT 167795 | ||||||||| || || ||| | ||||||| | ||| ||||| Sbjct 740 CCCTTAATAAATGAATATTTTTTGGATATTTTATTTTAAAAGCAAAA-AGTAAACAAATT 798 Query 167796 GTTTCTAATGATTTAACACCTCTATCAACATAATCACCTAAAAATATATATTTATTTTGG 167855 |||||||| |||| ||| | ||||||||||||||||||||||| | | |||| Sbjct 799 GTTTCTAAAGATTGTTTACCACGATCAACATAATCACCTAAAAATAAAAA---ATTTGTA 855 Query 167856 TTTGAAGGATTATCTAGTTTTTTAAAAATATTCAATAAATCACTAAATTGACCATGTAAA 167915 |||| ||||| | | || ||| | ||| | | ||| ||| |||| ||||| | | Sbjct 856 TTTGGAGGATAACCAGCAAATTCAAATAAATTTAGAAGATCTCTATATTGTCCATGGATA 915 Query 167916 TCACCTACA-ACCTTTAT-GGGACTTGTAGTTTTAATTAGCATTGGTTCGCTCATAAATA 167973 ||||| ||| | ||||| || ||||| |||||| || ||||| || | ||||||| | Sbjct 916 TCACC-ACATATTTTTATAGGTGATTGTATTTTTAA-TAACATTGATTGGTTCATAAAAA 973 Query 167974 TTGTTCTTGATT 167985 || | |||||| Sbjct 974 TTTCTTTTGATT 985 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186788424719483