Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoloma_20neurophilia_20[genbank_20GCA_5F001432165.1_202015-11- 05] 1,603 sequences; 5,248,409 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq495 269 4e-67 seq1321 134 2e-26 >seq495 Length=2372 Score = 269 bits (298), Expect = 4e-67 Identities = 591/874 (68%), Gaps = 16/874 (2%) Strand=Plus/Plus Query 39325 TTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATT 39384 |||||| |||||| || |||||||| ||||| || ||||| |||| ||||| ||||| Sbjct 277 TTTTTGATATTCAGATACACGTTTCTCAAAAAAGTTGGTTTTACCTTGTAATGAAATATT 336 Query 39385 TTCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttA-AATCCTAATTCTGAAA 39443 ||||||||||||||| || || | | |||||| ||||||| |||| ||| || || Sbjct 337 TTCCATGAAATCAAATGGGTTGTTCGTATTATAAACTTTTTTACAATCAAAATCTTGTAA 396 Query 39444 TCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGA 39503 | | |||||| || ||||||| ||| | ||| | ||||||||| ||||| | Sbjct 397 G-ATGCCATCTGCTACGAATTCTACATATTTGCACATGGAATTACAATTCATACCTATAA 455 Query 39504 GTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTA 39563 || || || | | | | | |||||| || || || ||||| || || | | | Sbjct 456 GTGAGACAGGCAATGAAACATTAACAAACTCCTTCTCTATTTCTACTGCTTCCATCACAA 515 Query 39564 TCGATGTTACTACCTCATCACT--CGGTGGATGCAATAAATGTTTAAACATTAAGCAGGC 39621 | | | |||| ||| | | | | | | || | ||| | | |||| ||| Sbjct 516 TTTGTTTGACTATCTCTTTATTTACCTTATTTTTAAGATATGAGTGTA--TTAAAACGGC 573 Query 39622 GAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGG 39681 || | |||||| ||||||||||| || | || || |||||||| || ||||| Sbjct 574 AAATTTGTAATGTAAGCCCTCATCTCGTGATATGAGCTCATTTGAAAATGTCAGACCAGG 633 Query 39682 CATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCC--AGAAAAGAAGATG 39739 ||| || | || || | ||| || |||| ||||| || |||||| |||| Sbjct 634 CATCTTGCCTCTTTTCTTTAACCAGAAGATGGATGCAAAGGAAGAGGAGAAAAAAAGA-- 691 Query 39740 CCTTCTACTGCTGCAAATGCAA-CAAGTCTCTCTCCGTA-ACTTGTATCATTA-TGTATC 39796 |||||||| ||||||||| | ||| ||| | | | | | | | | | ||| Sbjct 692 CCTTCTACACATGCAAATGCTATCAA---TCTGATAGAATAGTCCTCTTTTGAGTCAATC 748 Query 39797 CACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAG 39856 || || ||||| ||| || |||| | | || || ||| || || ||||| Sbjct 749 CATTTGAAACACCAATTAGCCTTTTTCTCAATTGATGGAATATTTTTGATTGCGTTAAAC 808 Query 39857 AGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCT 39916 ||| | ||||||| || ||||||||| ||| || || ||||||| | ||||| || Sbjct 809 AGAAAGTGTTTTTGTTCGTTATCTTTAATATAAGTGTCAATTAACAAAGAGTACATCTCA 868 Query 39917 GAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGT 39976 |||||||||||||| ||| ||||| ||||||||||||||| ||||||| ||| || Sbjct 869 GAATGGATGTTTTCTATCATAATCTGGAATCCGTAAAAACATTTTGCTTCTTTAAGCTGA 928 Query 39977 ACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAA 40036 | ||| |||||||||| ||||||||||| || ||||| ||||| || || ||| Sbjct 929 ATTTCTCTTGAAAATCTTTCTAATAAATTTTCATTTACGATTCCGTCACTTGCAGCGAAA 988 Query 40037 AATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTG 40096 ||||| | |||| | || ||||||| ||| | | || ||| | ||||| Sbjct 989 AATGCAAGAACATTTGATATGAAATATTGCTCACTTTCTTTTAAAGAATTAAAATCATTC 1048 Query 40097 ATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTAC 40156 | ||| ||| | ||| ||||||||| ||||||| || || | | || | || ||| Sbjct 1049 AAATCACGTGAAAGATCAACTTCTTCAACTGTCCAGAAAGAGGAAACCGCATGCTTATAC 1108 Query 40157 ATGTTCCATATATCACGATATTGTATTGGAAAAA 40190 || | ||| |||||| | | || ||||||||||| Sbjct 1109 ATTTGCCAAATATCATGGTGTTCTATTGGAAAAA 1142 >seq1321 Length=4813 Score = 134 bits (148), Expect = 2e-26 Identities = 311/462 (67%), Gaps = 10/462 (2%) Strand=Plus/Plus Query 69315 ATATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATT 69374 ||||| || || |||| ||| |||||||| ||| ||| || || |||| || ||||| Sbjct 3294 ATATTCTACAATTTCTGCACAGAGATTACTTGATTGGATCGTGCCAAGATGTTTTTGATT 3353 Query 69375 ACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGA 69434 | ||||||| | ||| ||||| | ||| | || || ||||||||||| || Sbjct 3354 GTTACATTTGTTAATTGTGTCTTTGTATAACATATATGGCAGCCCTGTTTCAATCTGTGA 3413 Query 69435 TTCGATAATAGATTTCCAAACGACCCTAGCATTTATTACGGTCTTGTAACGCTTCTCTTT 69494 | || | |||||||||| ||| || | ||| | || | | | | | |||| Sbjct 3414 TGAAATGAGCGATTTCCAAATAACCTGTGCTCTGATT--GTTCGTCTGGCTGTGCCCTTT 3471 Query 69495 TTCA--TATTG--TGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAG 69550 ||| | ||| ||||| | | || |||||| || || | | | || || || | Sbjct 3472 TTCTCTTCTTGGATGTATTTTTC--TTTGAATTCTTCGCCATATAAAAGATTTAAGCCTG 3529 Query 69551 GACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATA 69610 | ||||| || | | | ||||||| |||| || || || |||| |||||| | Sbjct 3530 GCACTTCATCAGGTGAAAAAAGTGACCACTGTCCATCTTCTTTGACACGTTCCATAAACA 3589 Query 69611 GATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAt 69670 ||| |||||||| | ||| |||| ||||||| || | ||||| || ||||||| Sbjct 3590 AATCAGGAATCCATAATGCTGTAAACAGATCTCGACATCGCATCTCTTCTTTACCTGTAT 3649 Query 69671 tttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGC-C 69729 ||||||| | || | || || | ||| ||| |||||||||||| | ||| | || | Sbjct 3650 TTTTTTTCAACTCTATGAATTCTAGAATGTCAACATGCCATGGTTCCAAATAAAATGCGC 3709 Query 69730 ATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTG 69771 ||| | || || ||||| | || |||||||| ||| ||||| Sbjct 3710 ATG-CACCAGGGCGTTTTTGACCACCCTGATCGATGCATCTG 3750 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686895036064920