Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoloma_20neurophilia_20[genbank_20GCA_5F001432165.1_202015-11- 05] 1,603 sequences; 5,248,409 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq495 199 3e-46 seq210 159 3e-34 >seq495 Length=2372 Score = 199 bits (220), Expect = 3e-46 Identities = 569/866 (66%), Gaps = 9/866 (1%) Strand=Plus/Minus Query 43709 TTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTTGG 43768 |||||||| || | ||||| || ||||||||||| || | || | || || ||| Sbjct 1140 TTTCCAATAGAACACCATGATATTTGGCAAATGTATAAGCATGCGGTTTCCTCTTTCTGG 1081 Query 43769 ACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGGATTGCATTAAAACCACAA 43828 |||| |||||||||||| | | || || ||| | | | |||||| | Sbjct 1080 ACAGTTGAAGAAGTTGATCTTTCACGTGATTTGAATGATTTTAATTCTTTAAAAGAAAGT 1021 Query 43829 GAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAAT 43888 || || |||| ||||| ||| | || ||||| ||||| || ||||| || || ||| Sbjct 1020 GAGCAATATTTCATATCAAATGTTCTTGCATTTTTCGCTGCAAGTGACGGAATCGTAAAT 961 Query 43889 GAAAATTTGGTTAG-TCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTA 43947 |||||||| |||| | ||| | |||| |||| | ||||||| ||||||||| Sbjct 960 GAAAATTT-ATTAGAAAGATTTTCAAGAGAAATTCAGCTTAAAGAAGCAAAATGTTTTTA 902 Query 43948 TGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATAC 44007 || || || ||| |||||||| || ||||| || |||||| | | | || || || Sbjct 901 CGGATTCCAGATTATGATAGAAAACATCCATTCTGAGATGTACTCTTTGTTAATTGACAC 842 Query 44008 GTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAACAGTACCTGC 44067 || || |||||| | | || || ||||||| || || ||| | || | Sbjct 841 TTATATTAAAGATAACGAACAAAAACACTTTCTGTTTAACGCAATCAAAAATATTCCATC 782 Query 44068 GATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGA-TTCTTTTGGAG 44126 ||| | | || || | ||| | |||||||| | ||||| || || || | Sbjct 781 AATTGAGAAAAAGGCTAATTGGTGTTTCAAATGGATTGACTCAAAAGAGGACTATTCTAT 722 Query 44127 AACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCA 44186 | || | | || |||||| ||| ||||| |||| || || || ||||| ||| Sbjct 721 CA-GATTGATAGCATTTGCATGTGTAGAAGGTCTTTTTTTCTCCTCTTCCTTTGCATCCA 663 Query 44187 TATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAA 44246 | || |||||||||||| |||| ||||||||| |||| |||||||||||| | ||| Sbjct 662 TCTTCTGGTTAAAGAAAAGAGGCAAGATGCCTGGTCTGACATTTTCAAATGAGCTCATAT 603 Query 44247 GTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTTACTTGGATATCTAGGAGACG 44306 || ||||| |||||||||| | | ||||| || ||| |||||| | Sbjct 602 CACGAGATGAGGGCTTACATTACAAATTTGCCGTTTTAATACACTCATATCT---TAAAA 546 Query 44307 ATAAGCCTTCATGTA-AGACAATTACAGATATTGTTGTAGAGGCAGTAAAGATAGAACAA 44365 ||||| | || | ||| | | | | | ||||| | || |||||| | ||||| | Sbjct 545 ATAAG-GTAAATAAAGAGATAGTCAAACAAATTGTGATGGAAGCAGTAGAAATAGAGAAG 487 Query 44366 GAATTTATGACAACAGCATTACCTGTAAATTTAATAGGAATGAATGAACTTTTGATGAAC 44425 || ||| | | |||| ||||| | ||||| |||||| || ||| | Sbjct 486 GAGTTTGTTAATGTTTCATTGCCTGTCTCACTTATAGGTATGAATTGTAATTCCATGTGC 427 Query 44426 CAATATATTGAATACATTGCAGATCGTTTACTTTTGGAACTGGGTTGCGATAAACACTAT 44485 ||||| | |||| | | |||||| | | | || | | ||| | ||| ||| Sbjct 426 AAATATGTAGAATTCGTAGCAGATGGCATCTTACAAGATTTTGATTGTAAAAAAGTTTAT 367 Query 44486 ATTGTACAAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTT 44545 | | | ||||| |||||||| |||||||||||||| || |||| ||||| |||||| Sbjct 366 AATACGAACAACCCATTTGATTTCATGGAAAATATTTCATTACAAGGTAAAACCAACTTT 307 Query 44546 TTTGAAAAACGCGTTGGAGAATATCA 44571 ||||| ||||| || |||||||| Sbjct 306 TTTGAGAAACGTGTATCTGAATATCA 281 >seq210 Length=3012 Score = 159 bits (176), Expect = 3e-34 Identities = 355/528 (67%), Gaps = 16/528 (3%) Strand=Plus/Minus Query 19242 AATTGGAGGATTGAGTAAAGAGTTTTCTGAAATCTTTCGTAGAGCATTTGTGTCGCGTGT 19301 |||||| || | | ||||| ||||| ||| ||| | |||| ||| | || ||||| Sbjct 2262 AATTGGTGGTCTAAAAAAAGAATTTTCAACAATTTTTAGACGAGCCTTTTTATCTCGTGT 2203 Query 19302 TTTTTCTGCAGATGTCATTAAACAATTGGGATGTAAACATGTTCGTGGACTTTTGCTTTA 19361 | | | || | ||||| | ||| | | | ||||| | || | | | || Sbjct 2202 ATATGACTCTGAATTAATTAATCGATTAAAAATTGACCATGTAAGAGGTATAATTTTATA 2143 Query 19362 TGGGCCACCGGGTTGTGGAAAAACATTAATTGCGAGAGAACTTAGTAAATTACTTA---C 19418 ||| ||||| ||| ||| ||||| |||||||| ||| || || ||||||| | | | Sbjct 2142 TGGACCACCTGGTACTGGTAAAACTTTAATTGCAAGACAAATTGGTAAATTGTTAAACGC 2083 Query 19419 AAAACAACCTCCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATC 19478 |||| |||| ||| |||||||||| || ||||| | ||||||||||| |||||||| Sbjct 2082 AAAAGAACCA---AAAGTTGTAAATGGACCAGAAATTCTCAATAAATATGTTGGTCAATC 2026 Query 19479 GGAAGAAAATGTACGACGTTTGTTTGCTGACGCTGAAGAAGA--ACAAAAACGTTTAGGG 19536 ||||||||| | || |||||| || |||||| ||| | ||||| | | Sbjct 2025 TGAAGAAAATATTCGTGAATTGTTTAAAGATGCTGAATTAGATCAGAAAAAAGGAAATCT 1966 Query 19537 CGCAAAAGTTCTTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGA 19596 |||| || || || || ||| | |||||| | || ||||| |||||| ||||| Sbjct 1965 TTCAAACCTT-----CATATCATTATATTTGATGAAATAGATGCAATTTGTAAGAAAAGA 1911 Query 19597 GGTTCTGGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGAC 19656 | | | ||| |||| || |||| |||||| | |||||||| |||| Sbjct 1910 AAT--AGTTCTAACAATTTTACA-GATCAAATTGTAAATCAATTATTGTCAAAAATAGAT 1854 Query 19657 GGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATA 19716 |||||||| | |||||||||||| ||||||| ||||| ||| | | || ||| | Sbjct 1853 GGTGTTAATAGTTTAAATAATATTTTAATTATTGGAATGACAAATCGTATTGATTTATTG 1794 Query 19717 GACAGCGCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATT 19764 || || | ||| |||| ||| |||| ||||| | || |||||| Sbjct 1793 GATGAAGCACTTTTAAGACCAGGTAGGTTTGAAATTCATATTGAAATT 1746 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397448235076015