Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudoloma_20neurophilia_20[genbank_20GCA_5F001432165.1_202015-11-
05] 1,603 sequences; 5,248,409 total letters
Query= NC_027923.1
Length=132831
Score E
Sequences producing significant alignments: (Bits) Value
seq1321 93.3 4e-14
seq41 89.7 4e-13
>seq1321
Length=4813
Score = 93.3 bits (102), Expect = 4e-14
Identities = 103/135 (76%), Gaps = 2/135 (1%)
Strand=Plus/Plus
Query 131648 ACTCGCTTCATAAACAAATCCGGCACCCATAACGC-GTACAACAGATCTCTAGCTTTTTT 131706
|| || | |||||||||||| || | |||||| || ||| |||||||||| | | |
Sbjct 3574 ACACGTTCCATAAACAAATCAGGAATCCATAATGCTGTA-AACAGATCTCGACATCGCAT 3632
Query 131707 CTCTTCTGTACCCATAAtttttttCAAATTTAAAAAGTCCAAAATGTCCGCATGCCAGGG 131766
||||||| |||| || |||||||||| | || || || | |||||| ||||||| ||
Sbjct 3633 CTCTTCTTTACCTGTATTTTTTTTCAACTCTATGAATTCTAGAATGTCAACATGCCATGG 3692
Query 131767 TTCCAAATACACTGC 131781
||||||||| | |||
Sbjct 3693 TTCCAAATAAAATGC 3707
>seq41
Length=3466
Score = 89.7 bits (98), Expect = 4e-13
Identities = 149/213 (70%), Gaps = 2/213 (1%)
Strand=Plus/Minus
Query 27036 AATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTC 27094
|| || |||||||| ||| |||||||||||||| || || ||| ||||| | | ||
Sbjct 3184 AAAACTAAATGTAAAGTACTTTCTTTTTGAATATTATAATCTGCTAATGTT-CTTCCATC 3126
Query 27095 TTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATC 27154
||| | |||||||| || | || | | |||||||| || || | ||| ||||||||
Sbjct 3125 TTCTAATTGTTTACCTGCAAATATTAATCTTTGTTGATCAGGTGGAATACCTTCTTTATC 3066
Query 27155 GGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGA 27214
|| || ||| | |||| | | || | | ||||||||| | |||||||
Sbjct 3065 TTGAATTTTTGCTTTTACATTTTCAATTGAATCAGATGGTTCAACTTCCAATGTTATAGT 3006
Query 27215 TTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247
||| || || | ||||| ||||| ||||||||
Sbjct 3005 TTTACCTGTTAATGTTTTAACAAAAATTTGCAT 2973
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 424926098242536
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |