Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoloma_20neurophilia_20[genbank_20GCA_5F001432165.1_202015-11- 05] 1,603 sequences; 5,248,409 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq1321 93.3 4e-14 seq41 89.7 4e-13 >seq1321 Length=4813 Score = 93.3 bits (102), Expect = 4e-14 Identities = 103/135 (76%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 131648 ACTCGCTTCATAAACAAATCCGGCACCCATAACGC-GTACAACAGATCTCTAGCTTTTTT 131706 || || | |||||||||||| || | |||||| || ||| |||||||||| | | | Sbjct 3574 ACACGTTCCATAAACAAATCAGGAATCCATAATGCTGTA-AACAGATCTCGACATCGCAT 3632 Query 131707 CTCTTCTGTACCCATAAtttttttCAAATTTAAAAAGTCCAAAATGTCCGCATGCCAGGG 131766 ||||||| |||| || |||||||||| | || || || | |||||| ||||||| || Sbjct 3633 CTCTTCTTTACCTGTATTTTTTTTCAACTCTATGAATTCTAGAATGTCAACATGCCATGG 3692 Query 131767 TTCCAAATACACTGC 131781 ||||||||| | ||| Sbjct 3693 TTCCAAATAAAATGC 3707 >seq41 Length=3466 Score = 89.7 bits (98), Expect = 4e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 27036 AATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTC 27094 || || |||||||| ||| |||||||||||||| || || ||| ||||| | | || Sbjct 3184 AAAACTAAATGTAAAGTACTTTCTTTTTGAATATTATAATCTGCTAATGTT-CTTCCATC 3126 Query 27095 TTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATC 27154 ||| | |||||||| || | || | | |||||||| || || | ||| |||||||| Sbjct 3125 TTCTAATTGTTTACCTGCAAATATTAATCTTTGTTGATCAGGTGGAATACCTTCTTTATC 3066 Query 27155 GGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGA 27214 || || ||| | |||| | | || | | ||||||||| | ||||||| Sbjct 3065 TTGAATTTTTGCTTTTACATTTTCAATTGAATCAGATGGTTCAACTTCCAATGTTATAGT 3006 Query 27215 TTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||| || || | ||||| ||||| |||||||| Sbjct 3005 TTTACCTGTTAATGTTTTAACAAAAATTTGCAT 2973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424926098242536