Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoloma_20neurophilia_20[genbank_20GCA_5F001432165.1_202015-11- 05] 1,603 sequences; 5,248,409 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq495 208 7e-49 >seq495 Length=2372 Score = 208 bits (230), Expect = 7e-49 Identities = 568/857 (66%), Gaps = 17/857 (2%) Strand=Plus/Plus Query 4256 TTTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATT 4315 |||||| ||||| ||||| || || || || || || ||||| |||| ||| |||||||| Sbjct 277 TTTTTGATATTCAGATACACGTTTCTCAAAAAAGTTGGTTTTACCTTGTAATGAAATATT 336 Query 4316 TTCCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAG 4375 |||||| |||||||| || || | | || ||| ||||| ||| | | | || | Sbjct 337 TTCCATGAAATCAAATGGGTTGTTCGTATTATAAACTTTTTTACAATCAAAATCTTGTAA 396 Query 4376 CAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAA 4435 | | || ||||| ||||||| ||| | || |||| | || || || || || | Sbjct 397 GATGCCATCTGCTACGAATTCTACATATTTGCACATGGAATTACAATTCATACCTATAAG 456 Query 4436 TCTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTAT 4495 | ||||| | | | | |||||| | ||||| ||| ||||| | | || Sbjct 457 TGAGACAGGCAATGAAACATTAACAAACTCCTTCTCTATTTCTACTGCTTCCATCACAAT 516 Query 4496 ATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAG-TATCCAAACAATAAACACGCAA 4554 | ||| | | | |||||| | |||||| |||| ||| | |||| |||| Sbjct 517 TTGTTTGACTATCTCTTTATTTACCTTATTTT-TAAGATATGAGTGTATTAAAACGGCAA 575 Query 4555 AATCACAATGCAAACCTTCGTCTC-TGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGC 4613 | | |||| || || || |||| || || | || || || ||||| || | || ||| Sbjct 576 ATTTGTAATGTAAGCCCTCATCTCGTGATA-TGAGCTCATTTGAAAATGTCAGACCAGGC 634 Query 4614 ATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCT 4673 || ||||| || || | ||| || || | ||||| || || || || | ||| Sbjct 635 ATCTTGCCTCTTTTCTTTAACCAGAAGATGGATGCAAAGGAAGAGGAGAAAAAAAGACCT 694 Query 4674 TCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTAATCCAT 4733 ||||| ||||| |||| |||| | ||| || |||| | ||||||| Sbjct 695 TCTACACATGCAAATGCTATCAATCTGATA--GAAT-AGTCCTCTTTTGAGTCAATCCAT 751 Query 4734 TTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATA-- 4791 || || ||| ||||| ||||||| || | ||||| | | || |||||||| | Sbjct 752 TTGAAACACCAATTAGCCTTTTTCTCAATTGATGGAATATTTTTGATTGCGTTAAACAGA 811 Query 4792 ATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAG 4851 | | |||| | | |||| |||||||||||| |||| | ||||| |||| Sbjct 812 AAGTGTTTTTGTTCGTTA--TCTTTAATATAAGTGTCAATTAACAAAGAGTACATCTCAG 869 Query 4852 AATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAA 4911 |||| || |||||||| |||||| ||||||||||| ||| | |||||| | | |||| Sbjct 870 AATGGATGTTTTCTATCATAATCTGGAATCCGTAAAAACATTTTGCTTCTTTAAGCTGAA 929 Query 4912 CTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAA 4971 ||| | |||||||||||| ||| ||||| ||||| || |||||||| || || |||| Sbjct 930 TTTCTCTTGAAAATCTTTCTAATAAATTTTCATTTACGATTCCGTCACTTGCAGCGAAAA 989 Query 4972 ACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTT---AAGTTTTTTCCAGTGGG 5028 | || | ||||| ||||| || || || || | ||| ||| || | | Sbjct 990 ATGCAAGAACATTTGATATGAAATATTGCTC-ACTTTCTTTTAAAG--AATTAAAATCAT 1046 Query 5029 GCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGT 5088 |||||| | | ||||||||||||||| ||||| || || | |||| | || | Sbjct 1047 TCAAATCACGTGAAAGATCAACTTCTTCAACTGTCCAGAAAGAGGAAACCGCATGCTTAT 1106 Query 5089 ACATAGACCAAATATCA 5105 |||| |||||||||| Sbjct 1107 ACATTTGCCAAATATCA 1123 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427041256918799