Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudoloma_20neurophilia_20[genbank_20GCA_5F001432165.1_202015-11-
05] 1,603 sequences; 5,248,409 total letters
Query= NC_030656.1
Length=133492
Score E
Sequences producing significant alignments: (Bits) Value
seq495 208 7e-49
>seq495
Length=2372
Score = 208 bits (230), Expect = 7e-49
Identities = 568/857 (66%), Gaps = 17/857 (2%)
Strand=Plus/Plus
Query 4256 TTTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATT 4315
|||||| ||||| ||||| || || || || || || ||||| |||| ||| ||||||||
Sbjct 277 TTTTTGATATTCAGATACACGTTTCTCAAAAAAGTTGGTTTTACCTTGTAATGAAATATT 336
Query 4316 TTCCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAG 4375
|||||| |||||||| || || | | || ||| ||||| ||| | | | || |
Sbjct 337 TTCCATGAAATCAAATGGGTTGTTCGTATTATAAACTTTTTTACAATCAAAATCTTGTAA 396
Query 4376 CAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAA 4435
| | || ||||| ||||||| ||| | || |||| | || || || || || |
Sbjct 397 GATGCCATCTGCTACGAATTCTACATATTTGCACATGGAATTACAATTCATACCTATAAG 456
Query 4436 TCTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTAT 4495
| ||||| | | | | |||||| | ||||| ||| ||||| | | ||
Sbjct 457 TGAGACAGGCAATGAAACATTAACAAACTCCTTCTCTATTTCTACTGCTTCCATCACAAT 516
Query 4496 ATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAG-TATCCAAACAATAAACACGCAA 4554
| ||| | | | |||||| | |||||| |||| ||| | |||| ||||
Sbjct 517 TTGTTTGACTATCTCTTTATTTACCTTATTTT-TAAGATATGAGTGTATTAAAACGGCAA 575
Query 4555 AATCACAATGCAAACCTTCGTCTC-TGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGC 4613
| | |||| || || || |||| || || | || || || ||||| || | || |||
Sbjct 576 ATTTGTAATGTAAGCCCTCATCTCGTGATA-TGAGCTCATTTGAAAATGTCAGACCAGGC 634
Query 4614 ATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCT 4673
|| ||||| || || | ||| || || | ||||| || || || || | |||
Sbjct 635 ATCTTGCCTCTTTTCTTTAACCAGAAGATGGATGCAAAGGAAGAGGAGAAAAAAAGACCT 694
Query 4674 TCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTAATCCAT 4733
||||| ||||| |||| |||| | ||| || |||| | |||||||
Sbjct 695 TCTACACATGCAAATGCTATCAATCTGATA--GAAT-AGTCCTCTTTTGAGTCAATCCAT 751
Query 4734 TTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATA-- 4791
|| || ||| ||||| ||||||| || | ||||| | | || |||||||| |
Sbjct 752 TTGAAACACCAATTAGCCTTTTTCTCAATTGATGGAATATTTTTGATTGCGTTAAACAGA 811
Query 4792 ATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAG 4851
| | |||| | | |||| |||||||||||| |||| | ||||| ||||
Sbjct 812 AAGTGTTTTTGTTCGTTA--TCTTTAATATAAGTGTCAATTAACAAAGAGTACATCTCAG 869
Query 4852 AATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAA 4911
|||| || |||||||| |||||| ||||||||||| ||| | |||||| | | ||||
Sbjct 870 AATGGATGTTTTCTATCATAATCTGGAATCCGTAAAAACATTTTGCTTCTTTAAGCTGAA 929
Query 4912 CTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAA 4971
||| | |||||||||||| ||| ||||| ||||| || |||||||| || || ||||
Sbjct 930 TTTCTCTTGAAAATCTTTCTAATAAATTTTCATTTACGATTCCGTCACTTGCAGCGAAAA 989
Query 4972 ACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTT---AAGTTTTTTCCAGTGGG 5028
| || | ||||| ||||| || || || || | ||| ||| || | |
Sbjct 990 ATGCAAGAACATTTGATATGAAATATTGCTC-ACTTTCTTTTAAAG--AATTAAAATCAT 1046
Query 5029 GCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGT 5088
|||||| | | ||||||||||||||| ||||| || || | |||| | || |
Sbjct 1047 TCAAATCACGTGAAAGATCAACTTCTTCAACTGTCCAGAAAGAGGAAACCGCATGCTTAT 1106
Query 5089 ACATAGACCAAATATCA 5105
|||| ||||||||||
Sbjct 1107 ACATTTGCCAAATATCA 1123
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 427041256918799
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |