Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudoloma_20neurophilia_20[genbank_20GCA_5F001432165.1_202015-11-
05] 1,603 sequences; 5,248,409 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
seq495 233 3e-56
seq1321 131 2e-25
>seq495
Length=2372
Score = 233 bits (258), Expect = 3e-56
Identities = 584/879 (66%), Gaps = 26/879 (3%)
Strand=Plus/Plus
Query 47849 TTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATT 47908
||||||||||||| ||||||||||| ||||| || ||||| |||| ||||| |||||
Sbjct 277 TTTTTGATATTCAGATACACGTTTCTCAAAAAAGTTGGTTTTACCTTGTAATGAAATATT 336
Query 47909 TTCCATAAAATCAAATGGATTAACTGCATTATAAAtttttttA-AATCCTAATTCTGAAA 47967
|||||| ||||||||||| || | |||||||| ||||||| |||| ||| || ||
Sbjct 337 TTCCATGAAATCAAATGGGTTGTTCGTATTATAAACTTTTTTACAATCAAAATCTTGTAA 396
Query 47968 TCAGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTATAA 48027
| | |||||| |||||||||| |||| | ||| | ||||||||| |||||||
Sbjct 397 GATGCC-ATCTGCTACGAATTCTACATATTTGCACATGGAATTACAATTCATACCTATAA 455
Query 48028 GTTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTATTA 48087
|| || || | | | ||| |||||| | || || || || |||| | |
Sbjct 456 GTGAGACAGGCAATGAAACATTAACAAACTCCTTCTCTATTTCTACTGCTTCCATCACAA 515
Query 48088 TCGATGTTACCGTTTCCTCACTTGGTGGATAC--AACAAATGTTTAAACATTAAACATGC 48145
| | | || | || | | || || || | ||| | | ||||| ||
Sbjct 516 TTTGTTTGACTATCTCTTTATTTACCTTATTTTTAAGATATGAGTGTA--TTAAAACGGC 573
Query 48146 AAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGG 48205
||| | |||| | || ||||||| || | || || |||||||| ||||| ||
Sbjct 574 AAATTTGTAATGTAAGCCCTCATCTCGTGATATGAGCTCATTTGAAAATGTCAGACCAGG 633
Query 48206 CATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCC 48265
||| || | ||| || | ||| || || | || || || || || || | ||
Sbjct 634 CATCTTGCCTCTTTTCTTTAACCAGAAGATGGATGCAAAGGAAGAGGAGAAAAAAAGACC 693
Query 48266 TTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGT--ATCCAC 48323
|||||| |||||||| | | ||| || ||| ||| || |||||
Sbjct 694 TTCTACACATGCAAATGCTATCAATCTGATAGAATAGTCCTCTT--TTGAGTCAATCCAT 751
Query 48324 CGTTGTGCC--CAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGA 48381
||| | |||| |||||| |||| | | || || ||| || || ||||| |
Sbjct 752 --TTGAAACACCAATTAGCCTTTTTCTCAATTGATGGAATATTTTTGATTGCGTTAAACA 809
Query 48382 GAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGG 48441
|||||| ||||| | | ||||||||| ||||| || ||||| | | ||||| || |
Sbjct 810 GAAAGTGTTTTTGTTCGTTATCTTTAATATAAGTGTCAATTAACAAAGAGTACATCTCAG 869
Query 48442 AGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTA 48501
| || || ||||| || ||||| ||||||||||||||| | |||||| | | ||| |
Sbjct 870 AATGGATGTTTTCTATCATAATCTGGAATCCGTAAAAACATTTTGCTTCTTTAAGCTGAA 929
Query 48502 CCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAA 48561
|| | |||||| ||| ||||| |||||||| ||||| ||||| ||||| ||||
Sbjct 930 TTTCTCTTGAAAATCTTTCTAATAAATTTTCATTTACGATTCCGTCACTTGCAGCGAAAA 989
Query 48562 ATGCTAATACATGTTTAATAAAATATT------TTTCGTTGGAAGTCAGTTTATTCCAGT 48615
|||| | |||| | || ||||||| |||| || ||| ||| | |
Sbjct 990 ATGCAAGAACATTTGATATGAAATATTGCTCACTTTCTTTTAAAG------AATTAAAAT 1043
Query 48616 CATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTT 48675
|||| | ||| ||| | ||| ||||||||| ||||||| || || | | || | |
Sbjct 1044 CATTCAAATCACGTGAAAGATCAACTTCTTCAACTGTCCAGAAAGAGGAAACCGCATGCT 1103
Query 48676 TATACATATTCCATATATCACTGTATTGGATTGGGAAAA 48714
||||||| | ||| |||||| || || ||||| ||||
Sbjct 1104 TATACATTTGCCAAATATCATGGTGTTCTATTGGAAAAA 1142
>seq1321
Length=4813
Score = 131 bits (144), Expect = 2e-25
Identities = 328/496 (66%), Gaps = 2/496 (0%)
Strand=Plus/Plus
Query 77723 ATATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTT 77782
||||| || || || | ||| |||||||| ||| ||| ||||| |||| || ||| ||
Sbjct 3294 ATATTCTACAATTTCTGCACAGAGATTACTTGATTGGATCGTGCCAAGATGTTTTTGATT 3353
Query 77783 GCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGA 77842
| | ||| || || ||| || || | ||| | || ||| ||||||||||||||
Sbjct 3354 GTTACATTTGTTAATTGTGTCTTTGTATAACATATATGGCAGCCCTGTTTCAATCTGTGA 3413
Query 77843 TTCGATAATAGATTTCCAGACGACTCTAGCTTTTATCATAGATTTGTATCGCCTCTCTCT 77902
| || | |||||||| | || ||| | || | | || | | || | |
Sbjct 3414 TGAAATGAGCGATTTCCAAATAACCTGTGCTCTGATTGTTCGTCTGGCTGTGCCCTTTTT 3473
Query 77903 TTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCA 77962
|| | ||| | ||| || ||||| || || | | | || || || ||
Sbjct 3474 CTCTTCTTGGATGTATTTTTCTTTGAATTCTTCGCCATATAAAAGATTTAAGCCTGGCAC 3533
Query 77963 TTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATC 78022
||||| || | | | |||||| | |||||||| || || |||| |||||| | |||
Sbjct 3534 TTCATCAGGTGAAAAAAGTGACCACTGTCCATCTTCTTTGACACGTTCCATAAACAAATC 3593
Query 78023 AGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTT 78082
||| ||||||| || |||| |||||||| || ||||| || |||||||| ||
Sbjct 3594 AGGAATCCATAATGCTGTAAACAGATCTCGACATCGCATCTCTTCTTTACCTGTATTTTT 3653
Query 78083 TTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGC-CATAA 78141
||| | || | || || | ||| ||| |||||||||||| | ||| | ||| |||
Sbjct 3654 TTTCAACTCTATGAATTCTAGAATGTCAACATGCCATGGTTCCAAATAAAATGCGCAT-G 3712
Query 78142 CTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCA 78201
| ||||| ||||| | ||| |||||||| || ||||| || | | | ||| | |||
Sbjct 3713 CACCAGGGCGTTTTTGACCACCCTGATCGATGCATCTGAGCGTACTCTCAAAAATTTTCA 3772
Query 78202 ACATTGGAATAATACC 78217
| | ||| | ||| ||
Sbjct 3773 AAACTGGTACAATTCC 3788
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694654880573920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |