Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoloma_20neurophilia_20[genbank_20GCA_5F001432165.1_202015-11- 05] 1,603 sequences; 5,248,409 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq495 233 3e-56 seq1321 131 2e-25 >seq495 Length=2372 Score = 233 bits (258), Expect = 3e-56 Identities = 584/879 (66%), Gaps = 26/879 (3%) Strand=Plus/Plus Query 47849 TTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATT 47908 ||||||||||||| ||||||||||| ||||| || ||||| |||| ||||| ||||| Sbjct 277 TTTTTGATATTCAGATACACGTTTCTCAAAAAAGTTGGTTTTACCTTGTAATGAAATATT 336 Query 47909 TTCCATAAAATCAAATGGATTAACTGCATTATAAAtttttttA-AATCCTAATTCTGAAA 47967 |||||| ||||||||||| || | |||||||| ||||||| |||| ||| || || Sbjct 337 TTCCATGAAATCAAATGGGTTGTTCGTATTATAAACTTTTTTACAATCAAAATCTTGTAA 396 Query 47968 TCAGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTATAA 48027 | | |||||| |||||||||| |||| | ||| | ||||||||| ||||||| Sbjct 397 GATGCC-ATCTGCTACGAATTCTACATATTTGCACATGGAATTACAATTCATACCTATAA 455 Query 48028 GTTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTATTA 48087 || || || | | | ||| |||||| | || || || || |||| | | Sbjct 456 GTGAGACAGGCAATGAAACATTAACAAACTCCTTCTCTATTTCTACTGCTTCCATCACAA 515 Query 48088 TCGATGTTACCGTTTCCTCACTTGGTGGATAC--AACAAATGTTTAAACATTAAACATGC 48145 | | | || | || | | || || || | ||| | | ||||| || Sbjct 516 TTTGTTTGACTATCTCTTTATTTACCTTATTTTTAAGATATGAGTGTA--TTAAAACGGC 573 Query 48146 AAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGG 48205 ||| | |||| | || ||||||| || | || || |||||||| ||||| || Sbjct 574 AAATTTGTAATGTAAGCCCTCATCTCGTGATATGAGCTCATTTGAAAATGTCAGACCAGG 633 Query 48206 CATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCC 48265 ||| || | ||| || | ||| || || | || || || || || || | || Sbjct 634 CATCTTGCCTCTTTTCTTTAACCAGAAGATGGATGCAAAGGAAGAGGAGAAAAAAAGACC 693 Query 48266 TTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGT--ATCCAC 48323 |||||| |||||||| | | ||| || ||| ||| || ||||| Sbjct 694 TTCTACACATGCAAATGCTATCAATCTGATAGAATAGTCCTCTT--TTGAGTCAATCCAT 751 Query 48324 CGTTGTGCC--CAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGA 48381 ||| | |||| |||||| |||| | | || || ||| || || ||||| | Sbjct 752 --TTGAAACACCAATTAGCCTTTTTCTCAATTGATGGAATATTTTTGATTGCGTTAAACA 809 Query 48382 GAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGG 48441 |||||| ||||| | | ||||||||| ||||| || ||||| | | ||||| || | Sbjct 810 GAAAGTGTTTTTGTTCGTTATCTTTAATATAAGTGTCAATTAACAAAGAGTACATCTCAG 869 Query 48442 AGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTA 48501 | || || ||||| || ||||| ||||||||||||||| | |||||| | | ||| | Sbjct 870 AATGGATGTTTTCTATCATAATCTGGAATCCGTAAAAACATTTTGCTTCTTTAAGCTGAA 929 Query 48502 CCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAA 48561 || | |||||| ||| ||||| |||||||| ||||| ||||| ||||| |||| Sbjct 930 TTTCTCTTGAAAATCTTTCTAATAAATTTTCATTTACGATTCCGTCACTTGCAGCGAAAA 989 Query 48562 ATGCTAATACATGTTTAATAAAATATT------TTTCGTTGGAAGTCAGTTTATTCCAGT 48615 |||| | |||| | || ||||||| |||| || ||| ||| | | Sbjct 990 ATGCAAGAACATTTGATATGAAATATTGCTCACTTTCTTTTAAAG------AATTAAAAT 1043 Query 48616 CATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTT 48675 |||| | ||| ||| | ||| ||||||||| ||||||| || || | | || | | Sbjct 1044 CATTCAAATCACGTGAAAGATCAACTTCTTCAACTGTCCAGAAAGAGGAAACCGCATGCT 1103 Query 48676 TATACATATTCCATATATCACTGTATTGGATTGGGAAAA 48714 ||||||| | ||| |||||| || || ||||| |||| Sbjct 1104 TATACATTTGCCAAATATCATGGTGTTCTATTGGAAAAA 1142 >seq1321 Length=4813 Score = 131 bits (144), Expect = 2e-25 Identities = 328/496 (66%), Gaps = 2/496 (0%) Strand=Plus/Plus Query 77723 ATATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTT 77782 ||||| || || || | ||| |||||||| ||| ||| ||||| |||| || ||| || Sbjct 3294 ATATTCTACAATTTCTGCACAGAGATTACTTGATTGGATCGTGCCAAGATGTTTTTGATT 3353 Query 77783 GCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGA 77842 | | ||| || || ||| || || | ||| | || ||| |||||||||||||| Sbjct 3354 GTTACATTTGTTAATTGTGTCTTTGTATAACATATATGGCAGCCCTGTTTCAATCTGTGA 3413 Query 77843 TTCGATAATAGATTTCCAGACGACTCTAGCTTTTATCATAGATTTGTATCGCCTCTCTCT 77902 | || | |||||||| | || ||| | || | | || | | || | | Sbjct 3414 TGAAATGAGCGATTTCCAAATAACCTGTGCTCTGATTGTTCGTCTGGCTGTGCCCTTTTT 3473 Query 77903 TTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCA 77962 || | ||| | ||| || ||||| || || | | | || || || || Sbjct 3474 CTCTTCTTGGATGTATTTTTCTTTGAATTCTTCGCCATATAAAAGATTTAAGCCTGGCAC 3533 Query 77963 TTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATC 78022 ||||| || | | | |||||| | |||||||| || || |||| |||||| | ||| Sbjct 3534 TTCATCAGGTGAAAAAAGTGACCACTGTCCATCTTCTTTGACACGTTCCATAAACAAATC 3593 Query 78023 AGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTT 78082 ||| ||||||| || |||| |||||||| || ||||| || |||||||| || Sbjct 3594 AGGAATCCATAATGCTGTAAACAGATCTCGACATCGCATCTCTTCTTTACCTGTATTTTT 3653 Query 78083 TTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGC-CATAA 78141 ||| | || | || || | ||| ||| |||||||||||| | ||| | ||| ||| Sbjct 3654 TTTCAACTCTATGAATTCTAGAATGTCAACATGCCATGGTTCCAAATAAAATGCGCAT-G 3712 Query 78142 CTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCA 78201 | ||||| ||||| | ||| |||||||| || ||||| || | | | ||| | ||| Sbjct 3713 CACCAGGGCGTTTTTGACCACCCTGATCGATGCATCTGAGCGTACTCTCAAAAATTTTCA 3772 Query 78202 ACATTGGAATAATACC 78217 | | ||| | ||| || Sbjct 3773 AAACTGGTACAATTCC 3788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694654880573920