Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoloma_20neurophilia_20[genbank_20GCA_5F001432165.1_202015-11- 05] 1,603 sequences; 5,248,409 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq495 264 2e-65 seq1321 134 2e-26 >seq495 Length=2372 Score = 264 bits (292), Expect = 2e-65 Identities = 591/875 (68%), Gaps = 18/875 (2%) Strand=Plus/Plus Query 46338 TTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATT 46397 |||||| |||||| |||||||||||| ||||| || ||||| |||| ||||| ||||| Sbjct 277 TTTTTGATATTCAGATACACGTTTCTCAAAAAAGTTGGTTTTACCTTGTAATGAAATATT 336 Query 46398 TTCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttA-AATCCTAATTCTGAAA 46456 |||||| |||||||| || || | |||||||| ||||||| |||| ||| || || Sbjct 337 TTCCATGAAATCAAATGGGTTGTTCGTATTATAAACTTTTTTACAATCAAAATCTTGTAA 396 Query 46457 TCAGTCTATCTGCAACGAATTCTATATACGTTTTCATCATT---TCACAATTCATTCCTA 46513 | | |||||| |||||||||| ||| ||| || ||| | ||||||||| |||| Sbjct 397 GATGCC-ATCTGCTACGAATTCTACATA--TTTGCA-CATGGAATTACAATTCATACCTA 452 Query 46514 TGAGTTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATA 46573 | ||| ||| || | | | ||| |||||| | || || || || ||| | Sbjct 453 TAAGTGAGACAGGCAATGAAACATTAACAAACTCCTTCTCTATTTCTACTGCTTCCATCA 512 Query 46574 TTATCGATGTTACTGTTTCCTCACTTGGTGGATGCATCAAATGTTTAAACATTAAACATG 46633 || | | ||| | || | | || || | | || | |||||| | Sbjct 513 CAATTTGTTTGACTATCTCTTTATTTACCTTATTTTTAAGATATGAGTGTATTAAAACGG 572 Query 46634 CAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAG 46693 |||| | |||| | ||| ||||||| || | || || |||||||| || |||| Sbjct 573 CAAATTTGTAATGTAAGCCCTCATCTCGTGATATGAGCTCATTTGAAAATGTCAGACCAG 632 Query 46694 GCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGC 46753 |||| || | || || | ||| || || | || || || || || || | | Sbjct 633 GCATCTTGCCTCTTTTCTTTAACCAGAAGATGGATGCAAAGGAAGAGGAGAAAAAAAGAC 692 Query 46754 CTTCTACAGCCGCGAATGCGA-CAAGTCTCTCTCCGTAACTGGCATCATTATGAATCCAC 46812 |||||||| || ||||| | ||| ||| | || | | || || ||| || | Sbjct 693 CTTCTACACATGCAAATGCTATCAA---TCTGATAG-AATAGTCCTCTTT-TGAGTCAAT 747 Query 46813 C--TTTGAGCC--CAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAA 46868 | ||||| | |||| ||||||||||| | | || || ||| || || ||||| Sbjct 748 CCATTTGAAACACCAATTAGCCTTTTTCTCAATTGATGGAATATTTTTGATTGCGTTAAA 807 Query 46869 GAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTC 46928 ||||||| ||||| || ||||||||| ||| || || ||||| | | ||||| || Sbjct 808 CAGAAAGTGTTTTTGTTCGTTATCTTTAATATAAGTGTCAATTAACAAAGAGTACATCTC 867 Query 46929 TGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTG 46988 ||||| |||||||| || ||||| ||||||||||||||| ||||||| ||| ||| Sbjct 868 AGAATGGATGTTTTCTATCATAATCTGGAATCCGTAAAAACATTTTGCTTCTTTAAGCTG 927 Query 46989 TACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCAAA 47048 | ||| | |||||| ||| | ||||| ||||| || ||||| ||||| ||||| || Sbjct 928 AATTTCTCTTGAAAATCTTTCTAATAAATTTTCATTTACGATTCCGTCACTTGCAGCGAA 987 Query 47049 AAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCAGTCATT 47108 |||||| | |||| | || ||||||| ||| | | ||| | ||||| Sbjct 988 AAATGCAAGAACATTTGATATGAAATATTGCTCACTTTCTTTTAAAGAATTAAAATCATT 1047 Query 47109 GATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATA 47168 | ||| ||| | ||| ||||||||| |||||||||| || | | || | ||||| Sbjct 1048 CAAATCACGTGAAAGATCAACTTCTTCAACTGTCCAGAAAGAGGAAACCGCATGCTTATA 1107 Query 47169 CATATTCCATATATCACGATATTGGATCGGaaaaa 47203 ||| | ||| |||||| | | || || ||||||| Sbjct 1108 CATTTGCCAAATATCATGGTGTTCTATTGGAAAAA 1142 >seq1321 Length=4813 Score = 134 bits (148), Expect = 2e-26 Identities = 334/502 (67%), Gaps = 14/502 (3%) Strand=Plus/Plus Query 76318 ATATTGTATTATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTTTGTTGGTT 76377 ||||| || || || | || |||||||| | | ||| || ||||||| || ||| || Sbjct 3294 ATATTCTACAATTTCTGCACAGAGATTACTTGATTGGATCGTGCCAAGATGTTTTTGATT 3353 Query 76378 GCTCTTTTTGTTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAATCTGTGA 76437 | | ||||||| || ||| || || | | | | || || |||||||||||||| Sbjct 3354 GTTACATTTGTTAATTGTGTCTTTGTATAACATATATGGCAGCCCTGTTTCAATCTGTGA 3413 Query 76438 TTCGATAATAGATTTCCAGACGACTCTAGCTTTTATTATAGATTTGTATCGCTTCTCTCT 76497 | || | |||||||| | || ||| | ||| | | || | ||| | || Sbjct 3414 TGAAATGAGCGATTTCCAAATAACCTGTGCTCTGATTGT----TCGTCTGGCTGTGCCCT 3469 Query 76498 TT----CATATTG--TGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACC 76551 || | | ||| ||||| | | || ||||| || || | | | || || || Sbjct 3470 TTTTCTCTTCTTGGATGTATTTTTC--TTTGAATTCTTCGCCATATAAAAGATTTAAGCC 3527 Query 76552 AGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAA 76611 || ||||| || | | | |||||||| |||||||| || || |||| |||||| Sbjct 3528 TGGCACTTCATCAGGTGAAAAAAGTGACCACTGTCCATCTTCTTTGACACGTTCCATAAA 3587 Query 76612 GAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCTGT 76671 | |||||| ||||||| || |||| |||||||| || ||||| || ||||| Sbjct 3588 CAAATCAGGAATCCATAATGCTGTAAACAGATCTCGACATCGCATCTCTTCTTTACCTGT 3647 Query 76672 ATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGC 76731 ||| ||||| | |||| ||| || | ||| ||| |||||||||||| | ||| | || Sbjct 3648 ATTTTTTTTCAACTCTATGAATTCTAGAATGTCAACATGCCATGGTTCCAAATAAAATGC 3707 Query 76732 -CATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAA 76790 ||| |||| || ||||| | ||| |||||||| || ||||| || | | | ||| Sbjct 3708 GCAT-GCACCAGGGCGTTTTTGACCACCCTGATCGATGCATCTGAGCGTACTCTCAAAAA 3766 Query 76791 CTCTCAACATTGGAATAATGCC 76812 | |||| | ||| | ||| || Sbjct 3767 TTTTCAAAACTGGTACAATTCC 3788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712920114576960